Factsheet for TraesCS4D01G017200.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G019200.1	Wheat	nucleus	82.12	81.87
HORVU4Hr1G002970.1	Barley	nucleus	75.15	74.47
TraesCS4A01G294700.2	Wheat	nucleus	73.03	73.03
EER93695	Sorghum	nucleus	54.85	50.28
Zm00001d013588_P001	Maize	nucleus	53.94	49.44
GSMUA_Achr5P02140_001	Banana	nucleus	32.42	34.29
GSMUA_Achr4P32040_001	Banana	nucleus	34.85	33.72
Solyc02g069390.1.1	Tomato	nucleus	30.61	33.01
PGSC0003DMT400033627	Potato	nucleus	30.0	29.29
Solyc02g030460.2.1	Tomato	nucleus	29.39	28.7
Os03t0666300-00	Rice	nucleus	33.64	28.39
CDY02375	Canola	nucleus	30.91	28.02
VIT_10s0042g00940.t01	Wine grape	cytosol	24.85	27.99
AT2G35640.1	Thale cress	nucleus	28.79	27.94
CDX98246	Canola	nucleus	31.21	27.91
CDX77554	Canola	nucleus	31.52	26.94
Bra014906.1-P	Field mustard	nucleus	31.52	26.94
AT1G31310.1	Thale cress	nucleus	30.91	26.63
CDY49546	Canola	nucleus	29.7	26.49
Bra023175.1-P	Field mustard	nucleus	30.3	25.84
TraesCS2D01G549900.1	Wheat	nucleus, plastid	30.0	24.21
PGSC0003DMT400054486	Potato	nucleus	9.39	24.03
TraesCS3D01G434100.1	Wheat	nucleus	17.27	19.52
TraesCS2D01G286000.2	Wheat	nucleus	18.48	17.43
TraesCS5D01G450500.1	Wheat	plastid	18.79	17.22

Protein Annotations

EnsemblPlants:TraesCS4D01G017200.2	EnsemblPlantsGene:TraesCS4D01G017200	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
InterPro:Homeobox-like_sf	InterPro:IPR017877	InterPro:Myb-like_dom	PANTHER:PTHR33492	PANTHER:PTHR33492:SF6	PFAM:PF13837
PFscan:PS50090	SEG:seg	SUPFAM:SSF46689	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr4D:+:7735762..7736894

Molecular Weight (calculated)

36299.4 Da

IEP (calculated)

6.261

GRAVY (calculated)

-0.878

Length

330 amino acids

Sequence
(BLAST)

001: MDTKGSGAHR EGEETGNSNA GAMTVAREYR RGNWTLPETM LLIEAKKRVH EERHPADLGL ARWRWVEDYC WRAGCRRSQN QCNDRWDNLM RDYKKVRAYE
101: HAGAGGEAPR PSYWEMARAE RKARYLPSNL LREIYEAMGE IVERRMGFSG PGGPFLGAPP PPPMGSTGLV GVPMQASPLA QVQPRPLEDQ EETRGSSESS
201: PERKRLRLSL DGQPGSSTPA SAAGHNDRHQ EPQGDDREIS SDDAEEHEEL SGAIGQCAAI LSGALESREA AEERRHREVM AVEERRSVAR QARREAGEQC
301: MAGLAAAVGQ LAGSMLALAA KHEEGPAAPK

Best Arabidopsis Sequence Match ( AT2G35640.1 )
(BLAST)

001: MADADPSSGE QIVMRECRKG NWTVSETLVL IEAKKMDDQR RVRRSEKQPE GRNKPAELRW KWIEEYCWRR GCYRNQNQCN DKWDNLMRDY KKIREYERSR
101: VESSFNTVTS SSYWKMDKTE RKEKNLPSNM LPQIYDVLSE LVDRKTLPSS SSAAAAVGNG NGGQILRVCQ QSLGFVAPMM AQPMHQIPTT IVLSLPPPPP
201: QSLSLSLPSP PQPPPSSSFH AEPIPPTVGT SSTKRRRTTP GETTAGGERE VEEDAVGVAL SRCTSVITQV IRENEEGQER RHKEVVRLQE RRLKIEESKT
301: EINRQGMNGL VDAINQLASS ILALASSSCH NNRNHQGGPP

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9ZQN7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.