Factsheet for TraesCS5D01G450500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G195400.4
TraesCS1B01G210300.4
TraesCS1D01G199200.1
TraesCS4A01G321300.1
TraesCS5B01G557500.2
TraesCS5D01G551800.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33550.1	TraesCS1A01G195400.4	AT1G32230.1	19548978
AT2G33550.1	TraesCS1B01G210300.4	AT1G32230.1	19548978
AT2G33550.1	TraesCS1D01G199200.1	AT1G32230.1	19548978
AT2G33550.1	TraesCS4A01G321300.1	AT1G32230.1	19548978
AT2G33550.1	TraesCS5B01G557500.2	AT1G32230.1	19548978
AT2G33550.1	TraesCS5D01G551800.3	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G447700.1	Wheat	plastid	89.44	88.46
TraesCS5A01G443100.1	Wheat	plastid	87.22	87.47
HORVU5Hr1G106480.1	Barley	cytosol, nucleus	64.72	75.16
KXG30289	Sorghum	plastid	61.11	63.04
Zm00001d050583_P001	Maize	plastid	61.67	60.16
Zm00001d016604_P001	Maize	plastid	59.72	58.74
TraesCS2D01G286000.2	Wheat	nucleus	46.39	47.71
CDX85279	Canola	cytosol	29.72	44.21
VIT_01s0150g00050.t01	Wine grape	nucleus	40.56	42.94
AT2G33550.1	Thale cress	cytosol	36.94	42.36
GSMUA_Achr8P00510_001	Banana	nucleus	37.22	41.88
Os02t0516800-00	Rice	nucleus	51.11	41.26
Solyc04g045430.2.1	Tomato	nucleus	35.83	41.21
KRH36366	Soybean	nucleus	36.67	40.62
Bra005486.1-P	Field mustard	nucleus	35.83	40.57
CDY17185	Canola	cytosol	35.83	40.57
CDY27959	Canola	cytosol	35.56	40.38
CDY37710	Canola	cytosol	35.56	40.13
CDY23727	Canola	cytosol	34.72	39.94
KRG93139	Soybean	nucleus	35.0	39.5
Bra021860.1-P	Field mustard	nucleus	34.72	39.06
KRH01509	Soybean	nucleus	35.56	38.91
KRH45200	Soybean	nucleus	35.0	38.65
Solyc09g015150.1.1	Tomato	nucleus, plastid	10.83	36.79
VIT_17s0000g00270.t01	Wine grape	nucleus	34.44	36.58
PGSC0003DMT400087793	Potato	nucleus	30.56	35.71
PGSC0003DMT400087461	Potato	nucleus	30.56	35.71
Solyc01g065890.1.1	Tomato	cytosol	11.67	35.29
TraesCS3D01G434100.1	Wheat	nucleus	28.06	34.59
PGSC0003DMT400036757	Potato	nucleus	28.89	32.3
PGSC0003DMT400087902	Potato	nucleus	22.5	32.02
Solyc03g118230.1.1	Tomato	nucleus	28.61	30.93
Solyc01g065900.1.1	Tomato	nucleus	23.61	29.51
KRH41057	Soybean	nucleus	25.56	27.71
KRH59736	Soybean	nucleus	28.06	27.08
TraesCS4D01G017200.2	Wheat	nucleus	17.22	18.79
TraesCS2D01G549900.1	Wheat	nucleus, plastid	19.72	17.36

Protein Annotations

EnsemblPlants:TraesCS5D01G450500.1	EnsemblPlantsGene:TraesCS5D01G450500	InterPro:IPR017877	InterPro:Myb-like_dom	ncoils:Coil	PANTHER:PTHR33492
PANTHER:PTHR33492:SF1	PFAM:PF13837	PFscan:PS50090	SEG:seg	MapMan:35.1	:

Description

No Description!

Coordinates

chr5D:-:498777542..498779017

Molecular Weight (calculated)

38527.7 Da

IEP (calculated)

4.837

GRAVY (calculated)

-0.747

Length

360 amino acids

Sequence
(BLAST)

001: MSSAGDPAGA AAAAAPNPSV RAPRLPRWTR QEILVLIEGK RMVEVRGGAR GGRGRLAAAA AGATGEGAAA ALEPKWAAVA EYCRRHGVER GAVQCRKRWS
101: NLAGDWKKIK EWERAAAGAR EPSFWAMRND ARRERRLPGF FDREVYGILE GRGRGVVAGS SSGGDAAMEE VGVVRMEEDG EEEETGEEEE ERGKGKEVAV
201: AVETVFDSGR PAGEEVLFSE DEEEEDAETP EATPAPPPAV IALPISENSE ASRQQSAQQG TTKGGQGGHQ GSTKTAGSPT LQQSGQKRRR TGDDGEPRAE
301: GMADKLLEIL ERNSQLVAAQ LEAQNLNSER DREERREQAN SLAVVLGRLA DALGRIADKL

Best Arabidopsis Sequence Match ( AT5G51800.1 )
(BLAST)

001: MGETTKGDAT KPPPNQISSP KDSSLDHQAP NPSLLHHHHH HHQSFLPTPI FIPTVSSPGA PVIPKRPRFS TSSGLSPPQW KALPSPSTVP TASTISSSPT
101: PSTAVVTASS TETAGSSPPG QEATNSEKQQ QPKTESFQHK FRKGKYVSPV WKPNEMLWLA RAWRAQYQTQ GTGSGSGSVE GRGKTRAEKD REVAEYLNRH
201: GINRDSKIAG TKWDNMLGEF RKVYEWEKCG DQDKYGKSYF RLSPYERKQH RLPASFDEEV YQELALFMGP RVRAPTINRG GGGGATVTVA STPPSVEALP
301: PPLYPALMTS RDEYDIENNP IPSIGRGKRL ALSLVGDDHH PQYPYAHNIA RGSGLFSNKS LYNPFFEMIP SSSSSSSSLR DLRRIGKIRL TWEESVNLWA
401: EGEVDYGRIR VSGSSFLNAD ELTYLDDSMV ACTMESFQDG PLKGFSLDKF ISGQHLKVFG RQRSTSSSAP SPSVNVAGVF DRPQLQLSEP IYKSISTLEF
501: QDPSEHCLSK LRVPAGNLPS LFELARYLQE PPPENLRFPL RPDVYKDLPQ GKELFFSISS TELLDCRAIT YDIIGPIMSR LNSNNGFVIS SKDSLIPLWD
601: DCINRMVSKF CEMAILRKPD SSSCIENVQH QWPNVIGYVK GFGLWRGEEA DKVREGAADP SSLLAEKILW SYNDLPYILG YHAIGFTVTF CALSLSSQDR
701: VICTDLYSFN VSSPSDRIKA LVPCYRLASL LPLLADRCTT RPSCYNDFER IDRGDYVTEL TPHTVTRYYS SKRKWLGVKG IYDFLDQRVP HAEHLDMASE
801: KDLSLSFKPR GIRVKPRNID QLIDSLMCVT KALLALHDLS FMHRDMGWDN VMRSTATTTT TTDTDWFVCG FDAAVEAPQL NPHRPADKVV DNEEREDERG
901: RYAPEMERGL HAVKVDVWGV GYMIKTCGLS NVPKMLRDLQ GKCLEPNQEN RPTAADCFHH LLQVQSASTS SY

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FLH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.