Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- nucleus 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d012821_P003 | |
| Zm00001d014423_P002 | |
| Zm00001d030110_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G33550.1 | Zm00001d012821_P003 | AT1G32230.1 | 19548978 |
| AT2G33550.1 | Zm00001d014423_P002 | AT1G32230.1 | 19548978 |
| AT2G33550.1 | Zm00001d030110_P001 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d016604_P001 | Maize | plastid | 66.4 | 66.94 |
| TraesCS5D01G450500.1 | Wheat | plastid | 60.16 | 61.67 |
| TraesCS5B01G447700.1 | Wheat | plastid | 57.99 | 58.79 |
| TraesCS5A01G443100.1 | Wheat | plastid | 56.91 | 58.5 |
| HORVU5Hr1G106480.1 | Barley | cytosol, nucleus | 47.43 | 56.45 |
| Zm00001d025275_P001 | Maize | mitochondrion, nucleus | 46.34 | 51.2 |
| Zm00001d003889_P001 | Maize | nucleus | 44.99 | 47.56 |
| VIT_01s0150g00050.t01 | Wine grape | nucleus | 41.19 | 44.71 |
| CDX85279 | Canola | cytosol | 29.27 | 44.63 |
| KRG93139 | Soybean | nucleus | 37.4 | 43.26 |
| KRH36366 | Soybean | nucleus | 37.67 | 42.77 |
| Solyc04g045430.2.1 | Tomato | nucleus | 36.04 | 42.49 |
| AT2G33550.1 | Thale cress | cytosol | 36.04 | 42.36 |
| CDY17185 | Canola | cytosol | 35.77 | 41.51 |
| Bra005486.1-P | Field mustard | nucleus | 35.77 | 41.51 |
| CDY23727 | Canola | cytosol | 34.96 | 41.21 |
| CDY37710 | Canola | cytosol | 35.5 | 41.07 |
| CDY27959 | Canola | cytosol | 35.23 | 41.01 |
| GSMUA_Achr8P00510_001 | Banana | nucleus | 34.96 | 40.31 |
| Bra021860.1-P | Field mustard | nucleus | 34.96 | 40.31 |
| KRH45200 | Soybean | nucleus | 35.5 | 40.18 |
| KRH01509 | Soybean | nucleus | 35.5 | 39.82 |
| Os02t0516800-00 | Rice | nucleus | 46.07 | 38.12 |
| Zm00001d042271_P001 | Maize | nucleus, plastid | 28.46 | 37.91 |
| VIT_17s0000g00270.t01 | Wine grape | nucleus | 34.69 | 37.76 |
| Solyc09g015150.1.1 | Tomato | nucleus, plastid | 10.3 | 35.85 |
| PGSC0003DMT400087793 | Potato | nucleus | 29.54 | 35.39 |
| PGSC0003DMT400087461 | Potato | nucleus | 29.27 | 35.06 |
| Solyc01g065890.1.1 | Tomato | cytosol | 10.84 | 33.61 |
| PGSC0003DMT400036757 | Potato | nucleus | 27.91 | 31.99 |
| PGSC0003DMT400087902 | Potato | nucleus | 21.68 | 31.62 |
| Solyc03g118230.1.1 | Tomato | nucleus | 28.18 | 31.23 |
| Solyc01g065900.1.1 | Tomato | nucleus | 23.04 | 29.51 |
| KRH59736 | Soybean | nucleus | 28.73 | 28.42 |
| KRH41057 | Soybean | nucleus | 25.47 | 28.31 |
| Zm00001d034953_P001 | Maize | nucleus | 14.63 | 26.47 |
| Zm00001d001894_P001 | Maize | mitochondrion | 22.49 | 21.78 |
| Zm00001d013588_P001 | Maize | nucleus | 19.24 | 19.72 |
Protein Annotations
| EnsemblPlants:Zm00001d050583_P001 | EnsemblPlants:Zm00001d050583_T001 | EnsemblPlantsGene:Zm00001d050583 | InterPro:IPR017877 | InterPro:Myb-like_dom | ncoils:Coil |
| PANTHER:PTHR33492 | PANTHER:PTHR33492:SF1 | PFAM:PF13837 | PFscan:PS50090 | ProteinID:AQK52725.1 | SEG:seg |
| UniParc:UPI000843E439 | UniProt:A0A1D6Q2A0 | MapMan:35.1 | : | : | : |
Description
Trihelix transcription factor ASR3
Coordinates
chr4:+:102471564..102475941
Molecular Weight (calculated)
40159.8 Da
IEP (calculated)
5.088
GRAVY (calculated)
-0.723
Length
369 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTAGDPAVA AAAAAAAATP SGRAPRLPRW TRQEILVLIE GKRMVEGRGG RGARGRAAAA AASGEASAVA ALEPKWAAVA EYCRRHGLER GPVQCRKRWS
101: NLAGDYKKVK EWERAAAASR EPSFWAMRND ARRERRLPGF FDREVYDILE GRGRAIVDGR SARNAAAEQP APVRVDEDKE AEVPEAVFDS GRPATEEALF
201: SEDEEEEEED APPVAPPPPP PPVIAVPVSE KPEASRQQQS AEQDTVLSLN VMIRWKYLNS KQTRYTDAIS EAGTSKDTQP EQSSERDAPA QQGGQKRPRT
301: VEGAGEGTAD LESKLVEILD RNSRLVAAQL EAQNQNCELD REQRKDQANS LVVVLGRLAD ALGRIADKL
101: NLAGDYKKVK EWERAAAASR EPSFWAMRND ARRERRLPGF FDREVYDILE GRGRAIVDGR SARNAAAEQP APVRVDEDKE AEVPEAVFDS GRPATEEALF
201: SEDEEEEEED APPVAPPPPP PPVIAVPVSE KPEASRQQQS AEQDTVLSLN VMIRWKYLNS KQTRYTDAIS EAGTSKDTQP EQSSERDAPA QQGGQKRPRT
301: VEGAGEGTAD LESKLVEILD RNSRLVAAQL EAQNQNCELD REQRKDQANS LVVVLGRLAD ALGRIADKL
001: MALEQLGLGV SAVDGGENSS APSNDGGDDG VKTARLPRWT RQEILVLIQG KRVAENRVRR GRAAGMALGS GQMEPKWASV SSYCKRHGVN RGPVQCRKRW
101: SNLAGDYKKI KEWESQIKEE TESYWVMRND VRREKKLPGF FDKEVYDIVD GGVIPPAVPV LSLGLAPASD EGLLSDLDRR ESPEKLNSTP VAKSVTDVID
201: KEKQEACVAD QGRVKEKQPE AANVEGGSTS QEERKRKRTS FGEKEEEEEE GETKKMQNQL IEILERNGQL LAAQLEVQNL NLKLDREQRK DHGDSLVAVL
301: NKLADAVAKI ADKM
101: SNLAGDYKKI KEWESQIKEE TESYWVMRND VRREKKLPGF FDKEVYDIVD GGVIPPAVPV LSLGLAPASD EGLLSDLDRR ESPEKLNSTP VAKSVTDVID
201: KEKQEACVAD QGRVKEKQPE AANVEGGSTS QEERKRKRTS FGEKEEEEEE GETKKMQNQL IEILERNGQL LAAQLEVQNL NLKLDREQRK DHGDSLVAVL
301: NKLADAVAKI ADKM
Arabidopsis Description
ASR3Trihelix transcription factor ASR3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ20]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.