Factsheet for Os02t0516800-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 7
nucleus 1
vacuole 1

Predictors

GFP

MS/MS

Papers

nucleus: 19621931

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0854800-03
Os10t0577800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33550.1	Os03t0854800-03	AT1G32230.1	19548978
AT2G33550.1	Os10t0577800-01	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G450500.1	Wheat	plastid	41.26	51.11
TraesCS5B01G447700.1	Wheat	plastid	40.36	49.45
TraesCS5A01G443100.1	Wheat	plastid	39.69	49.3
KXG30289	Sorghum	plastid	38.34	49.0
Zm00001d016604_P001	Maize	plastid	39.01	47.54
Zm00001d050583_P001	Maize	plastid	38.12	46.07
HORVU5Hr1G106480.1	Barley	cytosol, nucleus	28.48	40.97
Solyc09g015150.1.1	Tomato	nucleus, plastid	8.97	37.74
VIT_01s0150g00050.t01	Wine grape	nucleus	26.01	34.12
Solyc01g065890.1.1	Tomato	cytosol	8.97	33.61
KRH36366	Soybean	nucleus	23.77	32.62
Solyc04g045430.2.1	Tomato	nucleus	22.87	32.59
PGSC0003DMT400087902	Potato	nucleus	18.39	32.41
GSMUA_Achr8P00510_001	Banana	nucleus	23.09	32.19
KRG93139	Soybean	nucleus	22.87	31.97
CDY23727	Canola	cytosol	21.97	31.31
AT2G33550.1	Thale cress	cytosol	21.75	30.89
Bra005486.1-P	Field mustard	nucleus	21.97	30.82
CDY17185	Canola	cytosol	21.97	30.82
CDY37710	Canola	cytosol	21.97	30.72
CDX85279	Canola	cytosol	16.59	30.58
KRH01509	Soybean	nucleus	22.42	30.4
KRH45200	Soybean	nucleus	22.2	30.37
CDY27959	Canola	cytosol	21.52	30.28
Bra021860.1-P	Field mustard	nucleus	21.52	30.0
VIT_17s0000g00270.t01	Wine grape	nucleus	21.97	28.91
PGSC0003DMT400087793	Potato	nucleus	19.28	27.92
PGSC0003DMT400087461	Potato	nucleus	19.28	27.92
Solyc03g118230.1.1	Tomato	nucleus	17.94	24.02
PGSC0003DMT400036757	Potato	nucleus	17.04	23.6
Solyc01g065900.1.1	Tomato	nucleus	14.8	22.92
KRH41057	Soybean	nucleus	17.04	22.89
KRH59736	Soybean	nucleus	17.71	21.18
Os04t0670900-00	Rice	nucleus	17.04	19.49
Os03t0666300-00	Rice	nucleus	15.7	17.9
Os04t0397500-00	Rice	cytosol, nucleus	1.57	10.77

Protein Annotations

EnsemblPlants:Os02t0516800-00	EnsemblPlantsGene:Os02g0516800	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
PANTHER:PTHR33492	PANTHER:PTHR33492:SF1	PFAM:PF13837	ProteinID:BAS78904.1	SEG:seg	UniParc:UPI0003939451
UniProt:A0A0P0VJP6	MapMan:35.1	:	:	:	:

Description

Conserved hypothetical protein. (Os02t0516800-00)

Coordinates

chr2:-:18658003..18662005

Molecular Weight (calculated)

47932.9 Da

IEP (calculated)

11.632

GRAVY (calculated)

-0.742

Length

446 amino acids

Sequence
(BLAST)

001: MPSLLSLSLS LSLSPFPSSP RVPSPPRRYL SVTPPASRRH VNFRHKKKKR KAHAPRMSTA GDPAAAAAAA AAATPSGRAP RLPRWTRQEI LVLIEGKRMV
101: EGRGGGRGGR GRAAAAAAAA AAAAAGGSGG EAAVAALEPK WAAVAEYCRR HGVERGAVQC RKRWSNLAGD YKKIKEWERA AAAAAPPREP SFWAMRNDAR
201: RERRLPGFFD REVYDILDGR GRGTLVSPSG GGNAAAGEEE PARAAAEVEV EVEEEEETGK TRARAEETVF DSGRPAAEES LFSDDEEEED DDEAPPATAA
301: AVAATAQAPP RAVIALPISA TILLFSQARR KTSSRSSRPH REARHRRRRR RRSSSRVGRS GGEPTTTRRR RTTAAAAASC RASWWRSWIG AAGWWRRSWR
401: RRTPTAGSTG SSGETRRPAS PSCSAGSPTR SAGSPTSYSQ AYTVYE

Best Arabidopsis Sequence Match ( AT2G33550.1 )
(BLAST)

001: MALEQLGLGV SAVDGGENSS APSNDGGDDG VKTARLPRWT RQEILVLIQG KRVAENRVRR GRAAGMALGS GQMEPKWASV SSYCKRHGVN RGPVQCRKRW
101: SNLAGDYKKI KEWESQIKEE TESYWVMRND VRREKKLPGF FDKEVYDIVD GGVIPPAVPV LSLGLAPASD EGLLSDLDRR ESPEKLNSTP VAKSVTDVID
201: KEKQEACVAD QGRVKEKQPE AANVEGGSTS QEERKRKRTS FGEKEEEEEE GETKKMQNQL IEILERNGQL LAAQLEVQNL NLKLDREQRK DHGDSLVAVL
301: NKLADAVAKI ADKM

Arabidopsis Description

ASR3Trihelix transcription factor ASR3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ20]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.