Factsheet for VIT_01s0150g00050.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0397500-00	Rice	cytosol, nucleus	12.06	63.08
KRG93139	Soybean	nucleus	54.41	57.99
KRH36366	Soybean	nucleus	52.35	54.77
KRH45200	Soybean	nucleus	50.88	53.07
Solyc04g045430.2.1	Tomato	nucleus	48.53	52.72
KRH01509	Soybean	nucleus	49.71	51.37
VIT_17s0000g00270.t01	Wine grape	nucleus	49.71	49.85
GSMUA_Achr10P...	Banana	nucleus	48.24	48.24
PGSC0003DMT400087461	Potato	nucleus	41.76	46.1
PGSC0003DMT400087793	Potato	nucleus	41.47	45.78
TraesCS2A01G287600.2	Wheat	nucleus	44.12	44.25
Zm00001d025275_P001	Maize	mitochondrion, nucleus	43.24	44.01
TraesCS2B01G304400.1	Wheat	nucleus	44.41	43.39
HORVU2Hr1G071100.8	Barley	cytosol	43.53	43.15
KXG30289	Sorghum	plastid	44.12	42.98
Solyc01g065890.1.1	Tomato	cytosol	15.0	42.86
TraesCS2D01G286000.2	Wheat	nucleus	43.82	42.57
GSMUA_Achr8P00510_001	Banana	nucleus	38.82	41.25
Zm00001d050583_P001	Maize	plastid	44.71	41.19
Zm00001d016604_P001	Maize	plastid	43.82	40.71
Solyc09g015150.1.1	Tomato	nucleus, plastid	12.65	40.57
TraesCS5D01G450500.1	Wheat	plastid	42.94	40.56
Zm00001d003889_P001	Maize	nucleus	40.88	39.83
TraesCS5A01G443100.1	Wheat	plastid	41.76	39.55
KXG26157	Sorghum	nucleus	41.47	39.17
GSMUA_Achr6P16420_001	Banana	golgi, nucleus, plastid	25.59	39.01
TraesCS5B01G447700.1	Wheat	plastid	41.76	39.01
PGSC0003DMT400087902	Potato	nucleus	28.82	38.74
Solyc01g065900.1.1	Tomato	nucleus	32.06	37.85
Zm00001d042271_P001	Maize	nucleus, plastid	30.0	36.82
HORVU5Hr1G106480.1	Barley	cytosol, nucleus	33.24	36.45
TraesCS3D01G434100.1	Wheat	nucleus	29.71	34.59
HORVU3Hr1G096240.1	Barley	nucleus	29.71	33.89
TraesCS3A01G441300.1	Wheat	nucleus	29.41	33.67
OQU88149	Sorghum	nucleus	28.53	32.33
Os02t0516800-00	Rice	nucleus	34.12	26.01
TraesCS3B01G475300.1	Wheat	nucleus, plastid	22.65	25.5
VIT_10s0042g00940.t01	Wine grape	cytosol	16.18	18.77

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100267783	wikigene:100267783	MapMan:35.1	ProteinID:CCB52261	ProteinID:CCB52261.1
UniProt:F6HJ64	EMBL:FN595770	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607	GO:GO:0009987
GO:GO:0042803	GO:GO:0045892	GO:GO:0050777	GO:GO:0071219	InterPro:IPR017877	EntrezGene:LOC100267783
wikigene:LOC100267783	InterPro:Myb-like_dom	PFAM:PF13837	PFscan:PS50090	PANTHER:PTHR21654	PANTHER:PTHR21654:SF51
TIGR:TC59693	TIGR:TC70593	UniParc:UPI00015CD089	ArrayExpress:VIT_01s0150g00050	EnsemblPlantsGene:VIT_01s0150g00050	EnsemblPlants:VIT_01s0150g00050.t01
RefSeq:XP_002269943	RefSeq:XP_002269943.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:-:22456611..22458947

Molecular Weight (calculated)

37323.6 Da

IEP (calculated)

5.029

GRAVY (calculated)

-0.752

Length

340 amino acids

Sequence
(BLAST)

001: MELERLSLAP APVDDDADAV PNGVNAAGDD GSRAPRLPRW TRQEILVLIQ GKKVAESRVR RGRTGGLAFG SAQIEPKWAS VSSYCKRHGV NRGPVQCRKR
101: WSNLAGDYKK IKEWESQIRD ESESFWVMRN DVRREKRLPG FFDREVYDML DGVGAAPPGP SGLALGLAPA PEGEGMVAPE EEAEAVFDSG RSAAAEDGLF
201: SDFEQSGGSP EKEPPAKEVP ATVAAPVPIS EKQYQPFPRE GSSQGPASKR HPASNPEMAS TSQEGRKRKR FTVDGDEETT RLQDQLIEVL ERNGRMLSDQ
301: LEAQNTNFQL DREQRKDQAD CLVAVLSKLA DALGRIADKL

Best Arabidopsis Sequence Match ( AT2G33550.1 )
(BLAST)

001: MALEQLGLGV SAVDGGENSS APSNDGGDDG VKTARLPRWT RQEILVLIQG KRVAENRVRR GRAAGMALGS GQMEPKWASV SSYCKRHGVN RGPVQCRKRW
101: SNLAGDYKKI KEWESQIKEE TESYWVMRND VRREKKLPGF FDKEVYDIVD GGVIPPAVPV LSLGLAPASD EGLLSDLDRR ESPEKLNSTP VAKSVTDVID
201: KEKQEACVAD QGRVKEKQPE AANVEGGSTS QEERKRKRTS FGEKEEEEEE GETKKMQNQL IEILERNGQL LAAQLEVQNL NLKLDREQRK DHGDSLVAVL
301: NKLADAVAKI ADKM

Arabidopsis Description

ASR3Trihelix transcription factor ASR3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ20]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.