Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G287600.2 | Wheat | nucleus | 90.8 | 93.22 |
| TraesCS2D01G286000.2 | Wheat | nucleus | 93.39 | 92.86 |
| Os04t0397500-00 | Rice | cytosol, nucleus | 16.67 | 89.23 |
| HORVU2Hr1G071100.8 | Barley | cytosol | 81.03 | 82.22 |
| KXG26157 | Sorghum | nucleus | 61.78 | 59.72 |
| Zm00001d025275_P001 | Maize | mitochondrion, nucleus | 56.9 | 59.28 |
| Zm00001d003889_P001 | Maize | nucleus | 54.89 | 54.73 |
| CDX85279 | Canola | cytosol | 32.47 | 46.69 |
| KRG93139 | Soybean | nucleus | 41.38 | 45.14 |
| TraesCS5B01G447700.1 | Wheat | plastid | 46.55 | 44.51 |
| VIT_01s0150g00050.t01 | Wine grape | nucleus | 43.39 | 44.41 |
| KRH36366 | Soybean | nucleus | 41.38 | 44.31 |
| CDY27959 | Canola | cytosol | 39.94 | 43.85 |
| AT2G33550.1 | Thale cress | cytosol | 38.51 | 42.68 |
| Solyc04g045430.2.1 | Tomato | nucleus | 38.22 | 42.49 |
| Bra005486.1-P | Field mustard | nucleus | 38.79 | 42.45 |
| CDY17185 | Canola | cytosol | 38.79 | 42.45 |
| KRH45200 | Soybean | nucleus | 39.08 | 41.72 |
| PGSC0003DMT400087793 | Potato | nucleus | 36.78 | 41.56 |
| KRH01509 | Soybean | nucleus | 38.79 | 41.03 |
| GSMUA_Achr8P00510_001 | Banana | nucleus | 37.07 | 40.31 |
| CDY23727 | Canola | cytosol | 35.63 | 39.62 |
| PGSC0003DMT400087461 | Potato | nucleus | 34.48 | 38.96 |
| Bra021860.1-P | Field mustard | nucleus | 35.63 | 38.75 |
| CDY37710 | Canola | cytosol | 35.34 | 38.56 |
| Solyc09g015150.1.1 | Tomato | nucleus, plastid | 11.49 | 37.74 |
| VIT_17s0000g00270.t01 | Wine grape | nucleus | 36.21 | 37.17 |
| Solyc01g065890.1.1 | Tomato | cytosol | 12.07 | 35.29 |
| PGSC0003DMT400087902 | Potato | nucleus | 25.57 | 35.18 |
| Solyc01g065900.1.1 | Tomato | nucleus | 26.72 | 32.29 |
| PGSC0003DMT400036757 | Potato | nucleus | 27.87 | 30.12 |
| Solyc03g118230.1.1 | Tomato | nucleus | 27.87 | 29.13 |
| KRH41057 | Soybean | nucleus | 26.72 | 28.01 |
| KRH59736 | Soybean | nucleus | 28.16 | 26.27 |
| TraesCS3B01G475300.1 | Wheat | nucleus, plastid | 22.7 | 26.16 |
| TraesCS4B01G019200.1 | Wheat | nucleus | 17.24 | 18.13 |
| TraesCS2B01G579700.1 | Wheat | nucleus, plastid | 19.83 | 16.75 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G304400.1 | EnsemblPlantsGene:TraesCS2B01G304400 | Gene3D:1.10.10.60 | InterPro:IPR017877 | InterPro:Myb-like_dom | ncoils:Coil |
| PANTHER:PTHR21654 | PANTHER:PTHR21654:SF51 | PFAM:PF13837 | PFscan:PS50090 | SEG:seg | MapMan:35.1 |
Description
No Description!
Coordinates
chr2B:-:432556281..432559419
Molecular Weight (calculated)
37165.6 Da
IEP (calculated)
6.197
GRAVY (calculated)
-0.648
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSAGDPGGG IAGPGRAARL PRWTRQEILV LIEGKRVVEV RGRGRGRGAA GGAAAEPTKW AAVAEYCRRH GVERGPVQCR KRWSNLAGDY KKIREWERSL
101: PSLAGKEVSF WAMRNDARRE RRLPGFFDRE VYDIIEGRGS GGGGIRDSGS NAAVALAETG EEEGKEKLVF DSGRASAAGD DGLFSSSSSS EEEDEETSTP
201: APAPAPAPVP VLPAAPYPPP SQVPTVVAVA VPVPVPEKKT EAPTQGSSEQ AGTSKGKQQE EIRITDEPPL PQGGQKRQRS DDAPGETADL QGKLVEILDR
301: SSRMVAAQLE AQNINCQLDR EQRKDQVSSL LGVLGKVADA LYRIADKL
101: PSLAGKEVSF WAMRNDARRE RRLPGFFDRE VYDIIEGRGS GGGGIRDSGS NAAVALAETG EEEGKEKLVF DSGRASAAGD DGLFSSSSSS EEEDEETSTP
201: APAPAPAPVP VLPAAPYPPP SQVPTVVAVA VPVPVPEKKT EAPTQGSSEQ AGTSKGKQQE EIRITDEPPL PQGGQKRQRS DDAPGETADL QGKLVEILDR
301: SSRMVAAQLE AQNINCQLDR EQRKDQVSSL LGVLGKVADA LYRIADKL
001: MALEQLGLGV SAVDGGENSS APSNDGGDDG VKTARLPRWT RQEILVLIQG KRVAENRVRR GRAAGMALGS GQMEPKWASV SSYCKRHGVN RGPVQCRKRW
101: SNLAGDYKKI KEWESQIKEE TESYWVMRND VRREKKLPGF FDKEVYDIVD GGVIPPAVPV LSLGLAPASD EGLLSDLDRR ESPEKLNSTP VAKSVTDVID
201: KEKQEACVAD QGRVKEKQPE AANVEGGSTS QEERKRKRTS FGEKEEEEEE GETKKMQNQL IEILERNGQL LAAQLEVQNL NLKLDREQRK DHGDSLVAVL
301: NKLADAVAKI ADKM
101: SNLAGDYKKI KEWESQIKEE TESYWVMRND VRREKKLPGF FDKEVYDIVD GGVIPPAVPV LSLGLAPASD EGLLSDLDRR ESPEKLNSTP VAKSVTDVID
201: KEKQEACVAD QGRVKEKQPE AANVEGGSTS QEERKRKRTS FGEKEEEEEE GETKKMQNQL IEILERNGQL LAAQLEVQNL NLKLDREQRK DHGDSLVAVL
301: NKLADAVAKI ADKM
Arabidopsis Description
ASR3Trihelix transcription factor ASR3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ20]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.