Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G33550.1 | CDY22597 | AT1G32230.1 | 19548978 |
| AT2G33550.1 | CDY41739 | AT1G32230.1 | 19548978 |
| AT2G33550.1 | CDY43007 | AT1G32230.1 | 19548978 |
| AT2G33550.1 | CDY60257 | AT1G32230.1 | 19548978 |
| AT2G33550.1 | CDY67026 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005486.1-P | Field mustard | nucleus | 99.37 | 99.37 |
| CDX85279 | Canola | cytosol | 73.58 | 96.69 |
| CDY27959 | Canola | cytosol | 95.28 | 95.58 |
| AT2G33550.1 | Thale cress | cytosol | 66.04 | 66.88 |
| CDY37710 | Canola | cytosol | 65.72 | 65.52 |
| CDY23727 | Canola | cytosol | 64.15 | 65.18 |
| Os04t0397500-00 | Rice | cytosol, nucleus | 11.32 | 55.38 |
| GSMUA_Achr10P... | Banana | nucleus | 45.28 | 42.35 |
| VIT_17s0000g00270.t01 | Wine grape | nucleus | 44.34 | 41.59 |
| KXG30289 | Sorghum | plastid | 44.65 | 40.69 |
| HORVU2Hr1G071100.8 | Barley | cytosol | 42.14 | 39.07 |
| TraesCS2B01G304400.1 | Wheat | nucleus | 42.45 | 38.79 |
| TraesCS2A01G287600.2 | Wheat | nucleus | 41.2 | 38.64 |
| Zm00001d016604_P001 | Maize | plastid | 44.34 | 38.52 |
| TraesCS2D01G286000.2 | Wheat | nucleus | 41.2 | 37.43 |
| Zm00001d025275_P001 | Maize | mitochondrion, nucleus | 39.31 | 37.43 |
| KXG26157 | Sorghum | nucleus | 42.14 | 37.22 |
| Zm00001d003889_P001 | Maize | nucleus | 40.25 | 36.68 |
| TraesCS5A01G443100.1 | Wheat | plastid | 41.2 | 36.49 |
| TraesCS5D01G450500.1 | Wheat | plastid | 40.57 | 35.83 |
| HORVU5Hr1G106480.1 | Barley | cytosol, nucleus | 34.91 | 35.81 |
| Zm00001d050583_P001 | Maize | plastid | 41.51 | 35.77 |
| TraesCS5B01G447700.1 | Wheat | plastid | 40.57 | 35.44 |
| Zm00001d042271_P001 | Maize | nucleus, plastid | 30.82 | 35.38 |
| OQU88149 | Sorghum | nucleus | 32.7 | 34.67 |
| PGSC0003DMT400036757 | Potato | nucleus | 34.59 | 34.16 |
| TraesCS3D01G434100.1 | Wheat | nucleus | 31.13 | 33.9 |
| GSMUA_Achr8P00510_001 | Banana | nucleus | 33.96 | 33.75 |
| TraesCS3A01G441300.1 | Wheat | nucleus | 31.45 | 33.67 |
| HORVU3Hr1G096240.1 | Barley | nucleus | 30.82 | 32.89 |
| Solyc03g118230.1.1 | Tomato | nucleus | 34.28 | 32.73 |
| KRH41057 | Soybean | nucleus | 32.7 | 31.33 |
| GSMUA_Achr6P16420_001 | Banana | golgi, nucleus, plastid | 21.7 | 30.94 |
| KRH59736 | Soybean | nucleus | 33.02 | 28.15 |
| TraesCS3B01G475300.1 | Wheat | nucleus, plastid | 24.53 | 25.83 |
| Os02t0516800-00 | Rice | nucleus | 30.82 | 21.97 |
| CDX98246 | Canola | nucleus | 20.44 | 17.62 |
| CDY02375 | Canola | nucleus | 19.18 | 16.76 |
| CDY49546 | Canola | nucleus | 19.18 | 16.49 |
| CDX77554 | Canola | nucleus | 19.81 | 16.32 |
Protein Annotations
| EnsemblPlants:CDY17185 | EnsemblPlantsGene:GSBRNA2T00095249001 | Gene3D:1.10.10.60 | GO:A0A078FRP4 | InterPro:IPR017877 | InterPro:Myb-like_dom |
| ncoils:Coil | PANTHER:PTHR21654 | PANTHER:PTHR21654:SF51 | PFAM:PF13837 | PFscan:PS50090 | ProteinID:CDY17185 |
| ProteinID:CDY17185.1 | SEG:seg | UniParc:UPI0004EE1B45 | UniProt:A0A078FRP4 | MapMan:35.1 | : |
Description
BnaA05g10030DBnaA05g10030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FRP4]
Coordinates
chrLK032071:-:342716..344309
Molecular Weight (calculated)
34772.9 Da
IEP (calculated)
7.443
GRAVY (calculated)
-0.764
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MALEPLGLGA NVADGDGNVN GGGENNNTTT TTPSNEAGDD GVKTARLPRW TRQEILVLIQ GKRVAENRVR RGRAAGMALG SGQMEPKWAS VSSYCRRHGV
101: NRGPVQCRKR WSNLAGDYKK IKEWESQVKE EAESYWVMRN DVRRERKLPG FFDKEVYDIV DGGVVPPANP VLALGLAPAS TSAEEPARSV EKLSLASAPK
201: SLIDVIDKEK QAACEAADQG GMKERHPEAA NPEAASTSQE ERKRKRTSSG EEEGEATKSR QDQLIEILER NGQLLAAQLE VQNTNLKLDR EQRKDHGDNL
301: VAVLNKLADA VAKIADKL
101: NRGPVQCRKR WSNLAGDYKK IKEWESQVKE EAESYWVMRN DVRRERKLPG FFDKEVYDIV DGGVVPPANP VLALGLAPAS TSAEEPARSV EKLSLASAPK
201: SLIDVIDKEK QAACEAADQG GMKERHPEAA NPEAASTSQE ERKRKRTSSG EEEGEATKSR QDQLIEILER NGQLLAAQLE VQNTNLKLDR EQRKDHGDNL
301: VAVLNKLADA VAKIADKL
001: MALEQLGLGV SAVDGGENSS APSNDGGDDG VKTARLPRWT RQEILVLIQG KRVAENRVRR GRAAGMALGS GQMEPKWASV SSYCKRHGVN RGPVQCRKRW
101: SNLAGDYKKI KEWESQIKEE TESYWVMRND VRREKKLPGF FDKEVYDIVD GGVIPPAVPV LSLGLAPASD EGLLSDLDRR ESPEKLNSTP VAKSVTDVID
201: KEKQEACVAD QGRVKEKQPE AANVEGGSTS QEERKRKRTS FGEKEEEEEE GETKKMQNQL IEILERNGQL LAAQLEVQNL NLKLDREQRK DHGDSLVAVL
301: NKLADAVAKI ADKM
101: SNLAGDYKKI KEWESQIKEE TESYWVMRND VRREKKLPGF FDKEVYDIVD GGVIPPAVPV LSLGLAPASD EGLLSDLDRR ESPEKLNSTP VAKSVTDVID
201: KEKQEACVAD QGRVKEKQPE AANVEGGSTS QEERKRKRTS FGEKEEEEEE GETKKMQNQL IEILERNGQL LAAQLEVQNL NLKLDREQRK DHGDSLVAVL
301: NKLADAVAKI ADKM
Arabidopsis Description
ASR3Trihelix transcription factor ASR3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ20]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.