CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02375	Canola	nucleus	77.3	78.57
CDX77554	Canola	nucleus	71.89	68.91
CDX98246	Canola	nucleus	66.22	66.4
Bra023175.1-P	Field mustard	nucleus	66.22	63.31
AT1G31310.1	Thale cress	nucleus	59.19	57.18
PGSC0003DMT400033627	Potato	nucleus	41.35	45.27
Solyc02g030460.2.1	Tomato	nucleus	40.27	44.08
Solyc02g069390.1.1	Tomato	nucleus	35.68	43.14
GSMUA_Achr5P02140_001	Banana	nucleus	33.78	40.06
GSMUA_Achr4P32040_001	Banana	nucleus	35.14	38.12
PGSC0003DMT400054486	Potato	nucleus	12.97	37.21
Zm00001d034953_P001	Maize	nucleus	20.27	36.76
VIT_10s0042g00940.t01	Wine grape	cytosol	28.92	36.52
TraesCS4A01G294700.2	Wheat	nucleus	27.84	31.21
HORVU4Hr1G002970.1	Barley	nucleus	27.3	30.33
TraesCS4D01G017200.2	Wheat	nucleus	26.49	29.7
TraesCS4B01G019200.1	Wheat	nucleus	26.49	29.61
EER93695	Sorghum	nucleus	28.65	29.44
Zm00001d013588_P001	Maize	nucleus	26.76	27.5
Os03t0666300-00	Rice	nucleus	22.97	21.74
CDX85279	Canola	cytosol	13.51	20.66
CDY27959	Canola	cytosol	16.76	19.56
CDY17185	Canola	cytosol	16.49	19.18
CDY37710	Canola	cytosol	16.49	19.12
CDY23727	Canola	cytosol	15.95	18.85

Protein Annotations

EnsemblPlants:CDY49546	EnsemblPlantsGene:GSBRNA2T00093246001	InterPro:IPR017877	InterPro:Myb-like_dom	PANTHER:PTHR33492	PANTHER:PTHR33492:SF2
PFAM:PF13837	PFscan:PS50090	ProteinID:CDY49546	ProteinID:CDY49546.1	SEG:seg	UniParc:UPI0004EEFF1D
UniProt:A0A078IHV6	MapMan:35.2	:	:	:	:

Description

BnaC05g25240DBnaC05g25240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IHV6]

Coordinates

chrLK032840:+:47330..48847

Molecular Weight (calculated)

40978.1 Da

IEP (calculated)

9.108

GRAVY (calculated)

-0.838

Length

370 amino acids

Sequence
(BLAST)

001: MADKSGGLAM MREYRKGNWT LNETMVLIEA KKMDDERRMR RFIGLPAAEQ SHDSRSSSGN KPAELRWKWI EDFCWRKGCM RSQNQCNDKW DNLMRDYKKV
101: REYERRRVES SFATESSSSA AAETGTYWTM EKSERKERNL PSNMSPQTYQ ALFDVVESKT HPSSTAATNV TAAVAAAAAS GNGSGGLGFV QKHQMNQPHV
201: LLPLQPPPPP PLPPSQALQP RPLLLSPPPP PSFHAQPILP TKDTSSDSDT SEHPDTSPAK RRKTIPTTTA GPSGAGRGNA ETEEGETVVA AAFSRSASVI
301: ANAIRESEER QDRRHKEVMS LEERRLMIEE SNVQINREGM GLVEAINKLA NSIFALASSR HNNQHQGGPS

Best Arabidopsis Sequence Match ( AT1G31310.1 )
(BLAST)

001: MADQSGGLVM MREYRKGNWT LNETMVLIEA KRMDDERRMR RSIGLPPPEQ QQDIRSNKPA ELRWKWIEDY CWRKGCMRSQ NQCNDKWDNL MRDYKKVREY
101: ERRRVESSIT AGESSSSSAP AGETASYWKM EKSERKERSL PSNMLPQTYQ ALFEVVESKT LPSSTAVTAV TAAVAAAAAA ISSGNGSGGG QIQKVIQQGL
201: GFVVPKVHQI IQQQPVLLPL QPPPPPPPSQ PLPRPLLLPP PPPPSFHAQP ILPTKDSSTD SDTSEYSDTS PAKRRRTMPT TTTAGPSGGG VDVEEVGRSK
301: RDEETTVAAA LSRSVSVIAN AIRESEERQD RRHKEVMNVQ ERRLKIEESN VEMNREGMNG LVEAINKLAS SIFALASSSR HNN

Arabidopsis Description

Hydroxyproline-rich glycoprotein family protein [Source:UniProtKB/TrEMBL;Acc:F4I9C1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.