Factsheet for TraesCS4A01G294700.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G017200.2	Wheat	nucleus	73.03	73.03
TraesCS4B01G019200.1	Wheat	nucleus	70.0	69.79
HORVU4Hr1G002970.1	Barley	nucleus	69.7	69.07
Zm00001d013588_P001	Maize	nucleus	55.45	50.83
EER93695	Sorghum	nucleus	55.15	50.56
GSMUA_Achr5P02140_001	Banana	nucleus	33.03	34.94
Solyc02g069390.1.1	Tomato	nucleus	31.82	34.31
GSMUA_Achr4P32040_001	Banana	nucleus	34.85	33.72
AT2G35640.1	Thale cress	nucleus	30.91	30.0
CDX98246	Canola	nucleus	33.33	29.81
PGSC0003DMT400033627	Potato	nucleus	30.3	29.59
Solyc02g030460.2.1	Tomato	nucleus	30.3	29.59
CDY02375	Canola	nucleus	32.42	29.4
VIT_10s0042g00940.t01	Wine grape	cytosol	25.15	28.33
CDX77554	Canola	nucleus	33.03	28.24
Bra014906.1-P	Field mustard	nucleus	33.03	28.24
CDY49546	Canola	nucleus	31.21	27.84
Bra023175.1-P	Field mustard	nucleus	32.12	27.39
Os03t0666300-00	Rice	nucleus	32.42	27.37
AT1G31310.1	Thale cress	nucleus	30.91	26.63
TraesCS2A01G549300.1	Wheat	nucleus, plastid	32.12	26.04
PGSC0003DMT400054486	Potato	nucleus	9.39	24.03
TraesCS3A01G441300.1	Wheat	nucleus	17.58	19.53
TraesCS2A01G287600.2	Wheat	nucleus	19.7	19.17
TraesCS5A01G443100.1	Wheat	plastid	19.39	17.83

Protein Annotations

EnsemblPlants:TraesCS4A01G294700.2	EnsemblPlantsGene:TraesCS4A01G294700	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
InterPro:Homeobox-like_sf	InterPro:IPR017877	InterPro:Myb-like_dom	PANTHER:PTHR33492	PANTHER:PTHR33492:SF6	PFAM:PF13837
PFscan:PS50090	SEG:seg	SUPFAM:SSF46689	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr4A:-:595875055..595876187

Molecular Weight (calculated)

36149.3 Da

IEP (calculated)

6.131

GRAVY (calculated)

-0.793

Length

330 amino acids

Sequence
(BLAST)

001: MDTKGSGAHR EGEETGNTMA GNVGAGAMTV AREYRRGNWT LPETMLLIEA KKRVHEERHP ADLGLARWRW VEDYCWRAGC RRSQNQCNDR WDNLMRDYKK
101: VRAYEHAGAG AEAPSYWEMA RAERKARYLP SNLLREIYEA MGEIVERRMS FAGAGGPFLG APPPPPMVSS GLVGVPMQAS PLAQVQPRPL DQEETRGSSE
201: SSPERKRLRL SLDGQPGSST PASAAGHDDR HQEPQGDDRE SSDDTEEYDE LSGAIGQCAA ILSGALESRE AAEERRHREV MAVEERRSVA KQARREAGEQ
301: CMAGLAAAVG QLAGSMLALA AKHEGPAAPK

Best Arabidopsis Sequence Match ( AT2G35640.1 )
(BLAST)

001: MADADPSSGE QIVMRECRKG NWTVSETLVL IEAKKMDDQR RVRRSEKQPE GRNKPAELRW KWIEEYCWRR GCYRNQNQCN DKWDNLMRDY KKIREYERSR
101: VESSFNTVTS SSYWKMDKTE RKEKNLPSNM LPQIYDVLSE LVDRKTLPSS SSAAAAVGNG NGGQILRVCQ QSLGFVAPMM AQPMHQIPTT IVLSLPPPPP
201: QSLSLSLPSP PQPPPSSSFH AEPIPPTVGT SSTKRRRTTP GETTAGGERE VEEDAVGVAL SRCTSVITQV IRENEEGQER RHKEVVRLQE RRLKIEESKT
301: EINRQGMNGL VDAINQLASS ILALASSSCH NNRNHQGGPP

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9ZQN7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.