Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77554 | Canola | nucleus | 100.0 | 100.0 |
| Bra023175.1-P | Field mustard | nucleus | 65.03 | 64.86 |
| AT1G31310.1 | Thale cress | nucleus | 60.88 | 61.36 |
| PGSC0003DMT400033627 | Potato | nucleus | 39.9 | 45.56 |
| Solyc02g030460.2.1 | Tomato | nucleus | 39.38 | 44.97 |
| Solyc02g069390.1.1 | Tomato | nucleus | 34.97 | 44.12 |
| GSMUA_Achr5P02140_001 | Banana | nucleus | 31.61 | 39.1 |
| GSMUA_Achr4P32040_001 | Banana | nucleus | 33.94 | 38.42 |
| Zm00001d034953_P001 | Maize | nucleus | 19.95 | 37.75 |
| VIT_10s0042g00940.t01 | Wine grape | cytosol | 27.98 | 36.86 |
| PGSC0003DMT400054486 | Potato | nucleus | 11.4 | 34.11 |
| TraesCS4A01G294700.2 | Wheat | nucleus | 28.24 | 33.03 |
| HORVU4Hr1G002970.1 | Barley | nucleus | 27.46 | 31.83 |
| TraesCS4D01G017200.2 | Wheat | nucleus | 26.94 | 31.52 |
| TraesCS4B01G019200.1 | Wheat | nucleus | 26.68 | 31.12 |
| EER93695 | Sorghum | nucleus | 27.98 | 30.0 |
| Zm00001d013588_P001 | Maize | nucleus | 27.46 | 29.44 |
| Os03t0666300-00 | Rice | nucleus | 22.8 | 22.51 |
| Bra005486.1-P | Field mustard | nucleus | 16.32 | 19.81 |
| Bra021860.1-P | Field mustard | nucleus | 15.29 | 18.44 |
Protein Annotations
| EnsemblPlants:Bra014906.1 | EnsemblPlants:Bra014906.1-P | EnsemblPlantsGene:Bra014906 | InterPro:IPR017877 | InterPro:Myb-like_dom | ncoils:Coil |
| PANTHER:PTHR33492 | PANTHER:PTHR33492:SF2 | PFAM:PF13837 | PFscan:PS50090 | SEG:seg | UniParc:UPI0002540EDB |
| UniProt:M4DEI5 | MapMan:35.2 | : | : | : | : |
Description
AT1G31310 (E=3e-117) | hydroxyproline-rich glycoprotein family protein
Coordinates
chrA07:+:5348572..5349997
Molecular Weight (calculated)
42330.8 Da
IEP (calculated)
9.538
GRAVY (calculated)
-0.833
Length
386 amino acids
Sequence
(BLAST)
(BLAST)
001: MADQSGGLGL MREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPAPEQ SQDSRSSSGN KPAELRWKWI EDYCWRKGCM RSQNQCNDKW DNLMRDYKKV
101: REYERGRLES SFASGSSSSA AAETGSYWKM EKSERKERNL PSNMLPQTYQ ALFNVVESKT HPSSTAATAI TAAVAAAAAE TGSGNGSGGG LHIPKVIQQQ
201: GLGFVPQHQM IQPPVLLPLP RPPPPPSQPL QPRPLLLPPP PQPSFHAQPI LPTKDSSSDS DTNEHSDTSP AKRRRTMPTT AAGTSGGGGG GNAEMEEGES
301: VVAAALSRSA SVIANAIRES EERQDRRHKE VMSLKERRLK IEETNVEMNR EGMSGLVEAI NKLANSMFAL ASSTSRHNNQ HQGGPS
101: REYERGRLES SFASGSSSSA AAETGSYWKM EKSERKERNL PSNMLPQTYQ ALFNVVESKT HPSSTAATAI TAAVAAAAAE TGSGNGSGGG LHIPKVIQQQ
201: GLGFVPQHQM IQPPVLLPLP RPPPPPSQPL QPRPLLLPPP PQPSFHAQPI LPTKDSSSDS DTNEHSDTSP AKRRRTMPTT AAGTSGGGGG GNAEMEEGES
301: VVAAALSRSA SVIANAIRES EERQDRRHKE VMSLKERRLK IEETNVEMNR EGMSGLVEAI NKLANSMFAL ASSTSRHNNQ HQGGPS
001: MADQSGGLVM MREYRKGNWT LNETMVLIEA KRMDDERRMR RSIGLPPPEQ QQDIRSNKPA ELRWKWIEDY CWRKGCMRSQ NQCNDKWDNL MRDYKKVREY
101: ERRRVESSIT AGESSSSSAP AGETASYWKM EKSERKERSL PSNMLPQTYQ ALFEVVESKT LPSSTAVTAV TAAVAAAAAA ISSGNGSGGG QIQKVIQQGL
201: GFVVPKVHQI IQQQPVLLPL QPPPPPPPSQ PLPRPLLLPP PPPPSFHAQP ILPTKDSSTD SDTSEYSDTS PAKRRRTMPT TTTAGPSGGG VDVEEVGRSK
301: RDEETTVAAA LSRSVSVIAN AIRESEERQD RRHKEVMNVQ ERRLKIEESN VEMNREGMNG LVEAINKLAS SIFALASSSR HNN
101: ERRRVESSIT AGESSSSSAP AGETASYWKM EKSERKERSL PSNMLPQTYQ ALFEVVESKT LPSSTAVTAV TAAVAAAAAA ISSGNGSGGG QIQKVIQQGL
201: GFVVPKVHQI IQQQPVLLPL QPPPPPPPSQ PLPRPLLLPP PPPPSFHAQP ILPTKDSSTD SDTSEYSDTS PAKRRRTMPT TTTAGPSGGG VDVEEVGRSK
301: RDEETTVAAA LSRSVSVIAN AIRESEERQD RRHKEVMNVQ ERRLKIEESN VEMNREGMNG LVEAINKLAS SIFALASSSR HNN
Arabidopsis Description
Hydroxyproline-rich glycoprotein family protein [Source:UniProtKB/TrEMBL;Acc:F4I9C1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.