Factsheet for GSMUA_Achr4P32040_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P02140_001	Banana	nucleus	52.49	57.37
Solyc02g069390.1.1	Tomato	nucleus	38.12	42.48
Zm00001d034953_P001	Maize	nucleus	23.75	39.71
PGSC0003DMT400033627	Potato	nucleus	36.36	36.69
AT2G35640.1	Thale cress	nucleus	36.07	36.18
Solyc02g030460.2.1	Tomato	nucleus	35.78	36.09
CDY49546	Canola	nucleus	38.12	35.14
CDX98246	Canola	nucleus	37.83	34.96
TraesCS4D01G017200.2	Wheat	nucleus	33.72	34.85
TraesCS4A01G294700.2	Wheat	nucleus	33.72	34.85
TraesCS4B01G019200.1	Wheat	nucleus	33.14	34.14
CDY02375	Canola	nucleus	36.36	34.07
CDX77554	Canola	nucleus	38.42	33.94
Bra014906.1-P	Field mustard	nucleus	38.42	33.94
HORVU4Hr1G002970.1	Barley	nucleus	33.14	33.93
VIT_10s0042g00940.t01	Wine grape	cytosol	28.45	33.11
Bra023175.1-P	Field mustard	nucleus	37.54	33.07
AT1G31310.1	Thale cress	nucleus	36.95	32.9
EER93695	Sorghum	nucleus	34.31	32.5
Zm00001d013588_P001	Maize	nucleus	32.26	30.56
PGSC0003DMT400054486	Potato	nucleus	11.44	30.23
GSMUA_AchrUn_...	Banana	nucleus, plastid	32.55	26.0
Os03t0666300-00	Rice	nucleus	27.86	24.3
GSMUA_Achr10P...	Banana	nucleus	18.48	18.53
GSMUA_Achr8P00510_001	Banana	nucleus	16.42	17.5
GSMUA_Achr6P16420_001	Banana	golgi, nucleus, plastid	7.04	10.76

Protein Annotations

EnsemblPlants:GSMUA_Achr4P32040_001	EnsemblPlants:GSMUA_Achr4T32040_001	EnsemblPlantsGene:GSMUA_Achr4G32040_001	InterPro:IPR017877	InterPro:Myb-like_dom	ncoils:Coil
PANTHER:PTHR33492	PANTHER:PTHR33492:SF2	PFAM:PF13837	PFscan:PS50090	SEG:seg	UniParc:UPI000296287E
UniProt:M0STW6	MapMan:35.2	:	:	:	:

Description

transcription factor, putative [Source:GMGC_GENE;Acc:GSMUA_Achr4G32040_001]

Coordinates

chr4:+:28973544..28974872

Molecular Weight (calculated)

38037.0 Da

IEP (calculated)

8.464

GRAVY (calculated)

-0.923

Length

341 amino acids

Sequence
(BLAST)

001: MLKKDRIEME KNALVGVGEE EEEHEDRCRE YRKGNWSLTE TMVLIEAKKM DYERRAQRLK ELPRGSSGIG SSRPQEMRWK WVEDCCWRHG CYRSQNQCND
101: RWDNLMRDYK KVRTYELSLS AGGNPGLSYW KLERHERKEK NLPSNLLPEI YETLTEVVQR RAMAEKASGG GACVAAARPV QEERQLGGAS ASMQHSSPGA
201: GSQAPEPPMI APPLPPYPPS HSRPMATIDS EDSQHSVSPE RKRKRGGGGG GGSSSSRSNT MELSSAISKC ASIIAEALQA GEQKEETRHK DLVSIEERKA
301: KLEESKSEMS SQSMDGLASA INKLASSILG LATDRMQKLQ K

Best Arabidopsis Sequence Match ( AT2G35640.1 )
(BLAST)

001: MADADPSSGE QIVMRECRKG NWTVSETLVL IEAKKMDDQR RVRRSEKQPE GRNKPAELRW KWIEEYCWRR GCYRNQNQCN DKWDNLMRDY KKIREYERSR
101: VESSFNTVTS SSYWKMDKTE RKEKNLPSNM LPQIYDVLSE LVDRKTLPSS SSAAAAVGNG NGGQILRVCQ QSLGFVAPMM AQPMHQIPTT IVLSLPPPPP
201: QSLSLSLPSP PQPPPSSSFH AEPIPPTVGT SSTKRRRTTP GETTAGGERE VEEDAVGVAL SRCTSVITQV IRENEEGQER RHKEVVRLQE RRLKIEESKT
301: EINRQGMNGL VDAINQLASS ILALASSSCH NNRNHQGGPP

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9ZQN7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.