Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g030460.2.1 | Tomato | nucleus | 76.33 | 76.33 |
| PGSC0003DMT400054486 | Potato | nucleus | 16.57 | 43.41 |
| CDY49546 | Canola | nucleus | 45.27 | 41.35 |
| CDY02375 | Canola | nucleus | 43.2 | 40.11 |
| Bra014906.1-P | Field mustard | nucleus | 45.56 | 39.9 |
| CDX77554 | Canola | nucleus | 45.56 | 39.9 |
| AT2G35640.1 | Thale cress | nucleus | 39.94 | 39.71 |
| CDX98246 | Canola | nucleus | 42.9 | 39.3 |
| AT1G31310.1 | Thale cress | nucleus | 44.08 | 38.9 |
| Bra023175.1-P | Field mustard | nucleus | 44.38 | 38.76 |
| GSMUA_Achr5P02140_001 | Banana | nucleus | 34.32 | 37.18 |
| VIT_10s0042g00940.t01 | Wine grape | cytosol | 31.66 | 36.52 |
| GSMUA_Achr4P32040_001 | Banana | nucleus | 36.69 | 36.36 |
| Zm00001d034953_P001 | Maize | nucleus | 21.6 | 35.78 |
| HORVU4Hr1G002970.1 | Barley | nucleus | 29.88 | 30.33 |
| TraesCS4A01G294700.2 | Wheat | nucleus | 29.59 | 30.3 |
| TraesCS4D01G017200.2 | Wheat | nucleus | 29.29 | 30.0 |
| TraesCS4B01G019200.1 | Wheat | nucleus | 28.99 | 29.61 |
| Zm00001d013588_P001 | Maize | nucleus | 31.36 | 29.44 |
| EER93695 | Sorghum | nucleus | 30.77 | 28.89 |
| Os03t0666300-00 | Rice | nucleus | 24.85 | 21.48 |
| PGSC0003DMT400036757 | Potato | nucleus | 18.34 | 19.25 |
| PGSC0003DMT400087793 | Potato | nucleus | 15.98 | 17.53 |
| PGSC0003DMT400087461 | Potato | nucleus | 15.38 | 16.88 |
| PGSC0003DMT400087902 | Potato | nucleus | 12.13 | 16.21 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400033627 | EnsemblPlantsGene:PGSC0003DMG400012915 | EntrezGene:102579890 | InterPro:IPR017877 | InterPro:Myb-like_dom | PANTHER:PTHR33492 |
| PANTHER:PTHR33492:SF2 | PFAM:PF13837 | PFscan:PS50090 | PGSC:PGSC0003DMG400012915 | RefSeq:XP_006356897.1 | SEG:seg |
| UniParc:UPI000295ADA1 | UniProt:M1AZF0 | MapMan:35.2 | : | : | : |
Description
Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400012915]
Coordinates
chr2:-:14693175..14695583
Molecular Weight (calculated)
38313.4 Da
IEP (calculated)
8.858
GRAVY (calculated)
-0.988
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSSMLRDY RKGNWTIQET MVLIEAKKMD DERRMKRQGG DGNSSSERGN INKPGELRWK WVEDYCWRHG CLRSQNQCND KWDNLMRDFK KVREYERRVS
101: EKLLLAQGDD DNIIKSYWKI ERIERKEKNL PTNMLPEIYE ALVQVVDKRG QKVLVGTSFN PSTTSMSPTL QQLQIATLPL PPPPPPQLLP PPPPPPLGQP
201: PPNIPYTQPL PTMCDSSDRD KSEHSDSPAK RRRKGEGGGG GEEASGTSGD HHNINNLQEV GSAIFKSATI IAKTIKASEE GEERRHREML NLHERRLQIE
301: ESKAEINRQG INGLVDSINR LANSILSLAS NNQPPPPK
101: EKLLLAQGDD DNIIKSYWKI ERIERKEKNL PTNMLPEIYE ALVQVVDKRG QKVLVGTSFN PSTTSMSPTL QQLQIATLPL PPPPPPQLLP PPPPPPLGQP
201: PPNIPYTQPL PTMCDSSDRD KSEHSDSPAK RRRKGEGGGG GEEASGTSGD HHNINNLQEV GSAIFKSATI IAKTIKASEE GEERRHREML NLHERRLQIE
301: ESKAEINRQG INGLVDSINR LANSILSLAS NNQPPPPK
001: MADADPSSGE QIVMRECRKG NWTVSETLVL IEAKKMDDQR RVRRSEKQPE GRNKPAELRW KWIEEYCWRR GCYRNQNQCN DKWDNLMRDY KKIREYERSR
101: VESSFNTVTS SSYWKMDKTE RKEKNLPSNM LPQIYDVLSE LVDRKTLPSS SSAAAAVGNG NGGQILRVCQ QSLGFVAPMM AQPMHQIPTT IVLSLPPPPP
201: QSLSLSLPSP PQPPPSSSFH AEPIPPTVGT SSTKRRRTTP GETTAGGERE VEEDAVGVAL SRCTSVITQV IRENEEGQER RHKEVVRLQE RRLKIEESKT
301: EINRQGMNGL VDAINQLASS ILALASSSCH NNRNHQGGPP
101: VESSFNTVTS SSYWKMDKTE RKEKNLPSNM LPQIYDVLSE LVDRKTLPSS SSAAAAVGNG NGGQILRVCQ QSLGFVAPMM AQPMHQIPTT IVLSLPPPPP
201: QSLSLSLPSP PQPPPSSSFH AEPIPPTVGT SSTKRRRTTP GETTAGGERE VEEDAVGVAL SRCTSVITQV IRENEEGQER RHKEVVRLQE RRLKIEESKT
301: EINRQGMNGL VDAINQLASS ILALASSSCH NNRNHQGGPP
Arabidopsis Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9ZQN7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.