Factsheet for TraesCS4B01G019200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G017200.2	Wheat	nucleus	81.87	82.12
HORVU4Hr1G002970.1	Barley	nucleus	79.46	78.98
TraesCS4A01G294700.2	Wheat	nucleus	69.79	70.0
EER93695	Sorghum	nucleus	54.08	49.72
Zm00001d013588_P001	Maize	nucleus	52.87	48.61
GSMUA_Achr5P02140_001	Banana	nucleus	32.02	33.97
GSMUA_Achr4P32040_001	Banana	nucleus	34.14	33.14
Solyc02g069390.1.1	Tomato	nucleus	29.31	31.7
PGSC0003DMT400033627	Potato	nucleus	29.61	28.99
AT2G35640.1	Thale cress	nucleus	29.61	28.82
Solyc02g030460.2.1	Tomato	nucleus	29.0	28.4
CDX98246	Canola	nucleus	31.42	28.18
CDY02375	Canola	nucleus	30.51	27.75
VIT_10s0042g00940.t01	Wine grape	cytosol	24.47	27.65
Os03t0666300-00	Rice	nucleus	32.33	27.37
CDX77554	Canola	nucleus	31.12	26.68
Bra014906.1-P	Field mustard	nucleus	31.12	26.68
CDY49546	Canola	nucleus	29.61	26.49
AT1G31310.1	Thale cress	nucleus	30.51	26.37
Bra023175.1-P	Field mustard	nucleus	30.82	26.36
TraesCS2B01G579700.1	Wheat	nucleus, plastid	30.82	24.76
PGSC0003DMT400054486	Potato	nucleus	9.06	23.26
TraesCS3B01G475300.1	Wheat	nucleus, plastid	16.31	17.88
TraesCS5B01G447700.1	Wheat	plastid	19.03	17.31
TraesCS2B01G304400.1	Wheat	nucleus	18.13	17.24

Protein Annotations

EnsemblPlants:TraesCS4B01G019200.1	EnsemblPlantsGene:TraesCS4B01G019200	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017877	InterPro:Myb-like_dom	PANTHER:PTHR33492	PANTHER:PTHR33492:SF6
PFAM:PF13837	PFscan:PS50090	SEG:seg	SUPFAM:SSF46689	MapMan:35.2	:

Description

No Description!

Coordinates

chr4B:-:13994292..13995427

Molecular Weight (calculated)

36297.5 Da

IEP (calculated)

6.720

GRAVY (calculated)

-0.814

Length

331 amino acids

Sequence
(BLAST)

001: MDAKGSGGAH REGEETGNVM AGAMTVAREY RRGNWTLPET MLLIEAKKRV HSERHPADLG LGRWRWVEDY CWRAGCRRSQ NQCNDRWDNL MRDYKKVRAY
101: GEHAGAGAEA PRPSYWEMAR AERKARYLPS NLLREIYEAM AEIVERRTGF SGAGGPFLGA PPPPMASTGL VGVPMQASPL AQVQPRPLDQ EETRCSSESS
201: PERKRLRLSL DGQPGSSRST PASDAGHNDR HQEPQGDDRE VSSEDAEEQD ELSGAIGQCA AILSGALESR EAAEERRHRE VMAVEERRSV ARQARREAGE
301: QCMAGLAAAV GQLAGSMLAL AAKHEGPAAP K

Best Arabidopsis Sequence Match ( AT2G35640.1 )
(BLAST)

001: MADADPSSGE QIVMRECRKG NWTVSETLVL IEAKKMDDQR RVRRSEKQPE GRNKPAELRW KWIEEYCWRR GCYRNQNQCN DKWDNLMRDY KKIREYERSR
101: VESSFNTVTS SSYWKMDKTE RKEKNLPSNM LPQIYDVLSE LVDRKTLPSS SSAAAAVGNG NGGQILRVCQ QSLGFVAPMM AQPMHQIPTT IVLSLPPPPP
201: QSLSLSLPSP PQPPPSSSFH AEPIPPTVGT SSTKRRRTTP GETTAGGERE VEEDAVGVAL SRCTSVITQV IRENEEGQER RHKEVVRLQE RRLKIEESKT
301: EINRQGMNGL VDAINQLASS ILALASSSCH NNRNHQGGPP

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9ZQN7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.