Factsheet for HORVU4Hr1G002970.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G019200.1	Wheat	nucleus	78.98	79.46
TraesCS4D01G017200.2	Wheat	nucleus	74.47	75.15
TraesCS4A01G294700.2	Wheat	nucleus	69.07	69.7
EER93695	Sorghum	nucleus	55.26	51.11
Zm00001d013588_P001	Maize	nucleus	54.05	50.0
GSMUA_Achr5P02140_001	Banana	nucleus	31.53	33.65
GSMUA_Achr4P32040_001	Banana	nucleus	33.93	33.14
Solyc02g069390.1.1	Tomato	nucleus	29.13	31.7
PGSC0003DMT400033627	Potato	nucleus	30.33	29.88
Solyc02g030460.2.1	Tomato	nucleus	30.03	29.59
CDX98246	Canola	nucleus	32.43	29.27
CDY02375	Canola	nucleus	31.53	28.85
VIT_10s0042g00940.t01	Wine grape	cytosol	25.23	28.67
Os03t0666300-00	Rice	nucleus	33.63	28.64
AT2G35640.1	Thale cress	nucleus	29.13	28.53
CDX77554	Canola	nucleus	31.83	27.46
Bra014906.1-P	Field mustard	nucleus	31.83	27.46
Bra023175.1-P	Field mustard	nucleus	31.83	27.39
CDY49546	Canola	nucleus	30.33	27.3
AT1G31310.1	Thale cress	nucleus	30.93	26.89
PGSC0003DMT400054486	Potato	nucleus	8.71	22.48
HORVU3Hr1G096240.1	Barley	nucleus	17.72	19.8
HORVU5Hr1G106480.1	Barley	cytosol, nucleus	17.12	18.39
HORVU2Hr1G071100.8	Barley	cytosol	18.92	18.37

Protein Annotations

EnsemblPlants:HORVU4Hr1G002970.1	EnsemblPlantsGene:HORVU4Hr1G002970	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
InterPro:Homeobox-like_sf	InterPro:IPR017877	InterPro:Myb-like_dom	PANTHER:PTHR33492	PANTHER:PTHR33492:SF6	PFAM:PF13837
PFscan:PS50090	SEG:seg	SUPFAM:SSF46689	UniParc:UPI000B47E6DE	UniProt:A0A287MXY2	MapMan:35.2

Description

No Description!

Coordinates

chrchr4H:+:5967485..5969733

Molecular Weight (calculated)

36388.6 Da

IEP (calculated)

6.325

GRAVY (calculated)

-0.749

Length

333 amino acids

Sequence
(BLAST)

001: MDTKGSGFQG GGEEETGSIM PSNANANANA GAMTVAREYR RGNWTLPETM LLIEAKKRVH EDRHPADLGL ARWRWVEDYC WRAGCQRSQN QCNDRWDNLM
101: RDYKKVRAYE HTGAGPEAPS YWAMARAERK ARYLPSNLLR EIYEAMGEIV ERRMGIYGAG GTFLGAPPPP TVGTGLVSVP MQASPLAQVL PRPLDQETRC
201: SSESPERKRL RPSLDGQPGS STPASAAGNN DRHHQAPESD DRESSDDIEE HDELSGAIGQ CAAILSGALE SREAAEERRH REVMAVEERR SVARQARREA
301: GEQCMAGLAA AVGQLAGSML ALAAKHEGPA APK

Best Arabidopsis Sequence Match ( AT2G35640.1 )
(BLAST)

001: MADADPSSGE QIVMRECRKG NWTVSETLVL IEAKKMDDQR RVRRSEKQPE GRNKPAELRW KWIEEYCWRR GCYRNQNQCN DKWDNLMRDY KKIREYERSR
101: VESSFNTVTS SSYWKMDKTE RKEKNLPSNM LPQIYDVLSE LVDRKTLPSS SSAAAAVGNG NGGQILRVCQ QSLGFVAPMM AQPMHQIPTT IVLSLPPPPP
201: QSLSLSLPSP PQPPPSSSFH AEPIPPTVGT SSTKRRRTTP GETTAGGERE VEEDAVGVAL SRCTSVITQV IRENEEGQER RHKEVVRLQE RRLKIEESKT
301: EINRQGMNGL VDAINQLASS ILALASSSCH NNRNHQGGPP

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9ZQN7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.