Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02375 | Canola | nucleus | 69.92 | 70.88 |
| CDX77554 | Canola | nucleus | 73.44 | 70.21 |
| CDY49546 | Canola | nucleus | 66.4 | 66.22 |
| AT1G31310.1 | Thale cress | nucleus | 58.81 | 56.66 |
| Solyc02g030460.2.1 | Tomato | nucleus | 40.38 | 44.08 |
| Solyc02g069390.1.1 | Tomato | nucleus | 36.04 | 43.46 |
| PGSC0003DMT400033627 | Potato | nucleus | 39.3 | 42.9 |
| GSMUA_Achr5P02140_001 | Banana | nucleus | 33.06 | 39.1 |
| VIT_10s0042g00940.t01 | Wine grape | cytosol | 30.62 | 38.57 |
| GSMUA_Achr4P32040_001 | Banana | nucleus | 34.96 | 37.83 |
| Zm00001d034953_P001 | Maize | nucleus | 20.87 | 37.75 |
| PGSC0003DMT400054486 | Potato | nucleus | 11.65 | 33.33 |
| TraesCS4A01G294700.2 | Wheat | nucleus | 29.81 | 33.33 |
| HORVU4Hr1G002970.1 | Barley | nucleus | 29.27 | 32.43 |
| TraesCS4B01G019200.1 | Wheat | nucleus | 28.18 | 31.42 |
| TraesCS4D01G017200.2 | Wheat | nucleus | 27.91 | 31.21 |
| Zm00001d013588_P001 | Maize | nucleus | 29.54 | 30.28 |
| EER93695 | Sorghum | nucleus | 28.73 | 29.44 |
| Os03t0666300-00 | Rice | nucleus | 23.31 | 21.99 |
| CDX85279 | Canola | cytosol | 14.36 | 21.9 |
| CDY27959 | Canola | cytosol | 17.62 | 20.5 |
| CDY17185 | Canola | cytosol | 17.62 | 20.44 |
| CDY23727 | Canola | cytosol | 16.53 | 19.49 |
| CDY37710 | Canola | cytosol | 15.99 | 18.5 |
Protein Annotations
| EnsemblPlants:CDX98246 | EnsemblPlantsGene:GSBRNA2T00105754001 | InterPro:IPR017877 | InterPro:Myb-like_dom | ncoils:Coil | PANTHER:PTHR33492 |
| PANTHER:PTHR33492:SF2 | PFAM:PF13837 | PFscan:PS50090 | ProteinID:CDX98246 | ProteinID:CDX98246.1 | SEG:seg |
| UniParc:UPI0004EE1369 | MapMan:35.2 | : | : | : | : |
Description
BnaC07g08520D
Coordinates
chrLK031903:-:1298909..1300331
Molecular Weight (calculated)
40784.1 Da
IEP (calculated)
9.086
GRAVY (calculated)
-0.805
Length
369 amino acids
Sequence
(BLAST)
(BLAST)
001: MADQSGGLGL MREYRKGNWT LTETMVLIEA KKMDDERRMR RSIGLQAPEQ SQDSRSSSGN KPAELRWKWI EDYCWRKGCM RSQNQCNDKW DNLMRDYKKV
101: REYERGRLES SFASGPSSSA AAETGSYWKM EKSERKERNL PSNMLPQTYQ ALFDVVESKT HPSSTAATAI TAAVAAAAAE TGMIQQQGLG FVPQHQMIQP
201: RVLLPLPRPP PPPSQPLQPR TLLLPPPPQP SFHAQPILPT VDSDTSEHSD TSPAKRRRTM PTTAAGTSGG GGGGNAEMEE GESVVAAALS RSASVIANAF
301: RESEERQDRR HKEVMSLKER RLKIEESNVE MNREGMSGLV EAINKLASSM FALASSTSSH NNQHQGGPS
101: REYERGRLES SFASGPSSSA AAETGSYWKM EKSERKERNL PSNMLPQTYQ ALFDVVESKT HPSSTAATAI TAAVAAAAAE TGMIQQQGLG FVPQHQMIQP
201: RVLLPLPRPP PPPSQPLQPR TLLLPPPPQP SFHAQPILPT VDSDTSEHSD TSPAKRRRTM PTTAAGTSGG GGGGNAEMEE GESVVAAALS RSASVIANAF
301: RESEERQDRR HKEVMSLKER RLKIEESNVE MNREGMSGLV EAINKLASSM FALASSTSSH NNQHQGGPS
001: MADQSGGLVM MREYRKGNWT LNETMVLIEA KRMDDERRMR RSIGLPPPEQ QQDIRSNKPA ELRWKWIEDY CWRKGCMRSQ NQCNDKWDNL MRDYKKVREY
101: ERRRVESSIT AGESSSSSAP AGETASYWKM EKSERKERSL PSNMLPQTYQ ALFEVVESKT LPSSTAVTAV TAAVAAAAAA ISSGNGSGGG QIQKVIQQGL
201: GFVVPKVHQI IQQQPVLLPL QPPPPPPPSQ PLPRPLLLPP PPPPSFHAQP ILPTKDSSTD SDTSEYSDTS PAKRRRTMPT TTTAGPSGGG VDVEEVGRSK
301: RDEETTVAAA LSRSVSVIAN AIRESEERQD RRHKEVMNVQ ERRLKIEESN VEMNREGMNG LVEAINKLAS SIFALASSSR HNN
101: ERRRVESSIT AGESSSSSAP AGETASYWKM EKSERKERSL PSNMLPQTYQ ALFEVVESKT LPSSTAVTAV TAAVAAAAAA ISSGNGSGGG QIQKVIQQGL
201: GFVVPKVHQI IQQQPVLLPL QPPPPPPPSQ PLPRPLLLPP PPPPSFHAQP ILPTKDSSTD SDTSEYSDTS PAKRRRTMPT TTTAGPSGGG VDVEEVGRSK
301: RDEETTVAAA LSRSVSVIAN AIRESEERQD RRHKEVMNVQ ERRLKIEESN VEMNREGMNG LVEAINKLAS SIFALASSSR HNN
Arabidopsis Description
Hydroxyproline-rich glycoprotein family protein [Source:UniProtKB/TrEMBL;Acc:F4I9C1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.