Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G33550.1 | CDY22597 | AT1G32230.1 | 19548978 |
| AT2G33550.1 | CDY41739 | AT1G32230.1 | 19548978 |
| AT2G33550.1 | CDY43007 | AT1G32230.1 | 19548978 |
| AT2G33550.1 | CDY60257 | AT1G32230.1 | 19548978 |
| AT2G33550.1 | CDY67026 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY23727 | Canola | cytosol | 76.49 | 77.96 |
| AT2G33550.1 | Thale cress | cytosol | 69.28 | 70.38 |
| CDY17185 | Canola | cytosol | 65.52 | 65.72 |
| CDX85279 | Canola | cytosol | 48.9 | 64.46 |
| CDY27959 | Canola | cytosol | 63.32 | 63.72 |
| Os04t0397500-00 | Rice | cytosol, nucleus | 10.66 | 52.31 |
| VIT_17s0000g00270.t01 | Wine grape | nucleus | 45.45 | 42.77 |
| GSMUA_Achr10P... | Banana | nucleus | 43.57 | 40.88 |
| KXG30289 | Sorghum | plastid | 40.75 | 37.25 |
| HORVU2Hr1G071100.8 | Barley | cytosol | 39.5 | 36.73 |
| TraesCS2A01G287600.2 | Wheat | nucleus | 38.56 | 36.28 |
| Zm00001d025275_P001 | Maize | mitochondrion, nucleus | 37.62 | 35.93 |
| Zm00001d016604_P001 | Maize | plastid | 41.07 | 35.79 |
| TraesCS5D01G450500.1 | Wheat | plastid | 40.13 | 35.56 |
| Zm00001d050583_P001 | Maize | plastid | 41.07 | 35.5 |
| TraesCS2B01G304400.1 | Wheat | nucleus | 38.56 | 35.34 |
| KXG26157 | Sorghum | nucleus | 39.81 | 35.28 |
| TraesCS2D01G286000.2 | Wheat | nucleus | 38.56 | 35.14 |
| Zm00001d003889_P001 | Maize | nucleus | 37.93 | 34.67 |
| HORVU5Hr1G106480.1 | Barley | cytosol, nucleus | 33.54 | 34.52 |
| PGSC0003DMT400036757 | Potato | nucleus | 34.8 | 34.47 |
| TraesCS5B01G447700.1 | Wheat | plastid | 39.19 | 34.34 |
| TraesCS5A01G443100.1 | Wheat | plastid | 38.56 | 34.26 |
| Zm00001d042271_P001 | Maize | nucleus, plastid | 29.47 | 33.94 |
| GSMUA_Achr8P00510_001 | Banana | nucleus | 33.86 | 33.75 |
| Solyc03g118230.1.1 | Tomato | nucleus | 35.11 | 33.63 |
| HORVU3Hr1G096240.1 | Barley | nucleus | 31.03 | 33.22 |
| TraesCS3D01G434100.1 | Wheat | nucleus | 30.41 | 33.22 |
| TraesCS3A01G441300.1 | Wheat | nucleus | 30.41 | 32.66 |
| KRH41057 | Soybean | nucleus | 33.23 | 31.93 |
| GSMUA_Achr6P16420_001 | Banana | golgi, nucleus, plastid | 22.26 | 31.84 |
| OQU88149 | Sorghum | nucleus | 29.78 | 31.67 |
| KRH59736 | Soybean | nucleus | 32.92 | 28.15 |
| TraesCS3B01G475300.1 | Wheat | nucleus, plastid | 24.14 | 25.5 |
| Os02t0516800-00 | Rice | nucleus | 30.72 | 21.97 |
| CDY02375 | Canola | nucleus | 19.12 | 16.76 |
| CDY49546 | Canola | nucleus | 19.12 | 16.49 |
| CDX98246 | Canola | nucleus | 18.5 | 15.99 |
| CDX77554 | Canola | nucleus | 18.81 | 15.54 |
Protein Annotations
| EnsemblPlants:CDY37710 | EnsemblPlantsGene:GSBRNA2T00064610001 | Gene3D:1.10.10.60 | GO:A0A078HH93 | InterPro:IPR017877 | InterPro:Myb-like_dom |
| ncoils:Coil | PANTHER:PTHR21654 | PANTHER:PTHR21654:SF51 | PFAM:PF13837 | PFscan:PS50090 | ProteinID:CDY37710 |
| ProteinID:CDY37710.1 | SEG:seg | UniParc:UPI0004EF126E | UniProt:A0A078HH93 | MapMan:35.1 | : |
Description
BnaA04g19580DBnaA04g19580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HH93]
Coordinates
chrLK032406:+:172611..174122
Molecular Weight (calculated)
34954.1 Da
IEP (calculated)
5.407
GRAVY (calculated)
-0.756
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MALEQQLGLA VTAVDGDGNG NGGGGGENSA PSNEGGDDSV KTARLPRWTR QEILVLIQGK RVAENRVRRG RAAGMALGSG QMEPKWASVS SYCRRHGVNR
101: GPVQCRKRWS NLAGDYKKIK EWESQVKEET ESYWVMRNDV RRERKLPGFF DKEVYDVVDG GVVPPALALG LAPAATSTSV EPEGVLSELE RREPAPNKLL
201: QDVIDKEKQA VCGADDQGLV KEKDAEAANP EAGSTSQEAR KRKRTSVSED EEKEEEATKS MDNQLIQILE RNGQLLAAQL EVQNTNLKLD REQRKDHGDN
301: LVAVLSKLAD AVAKIADKL
101: GPVQCRKRWS NLAGDYKKIK EWESQVKEET ESYWVMRNDV RRERKLPGFF DKEVYDVVDG GVVPPALALG LAPAATSTSV EPEGVLSELE RREPAPNKLL
201: QDVIDKEKQA VCGADDQGLV KEKDAEAANP EAGSTSQEAR KRKRTSVSED EEKEEEATKS MDNQLIQILE RNGQLLAAQL EVQNTNLKLD REQRKDHGDN
301: LVAVLSKLAD AVAKIADKL
001: MALEQLGLGV SAVDGGENSS APSNDGGDDG VKTARLPRWT RQEILVLIQG KRVAENRVRR GRAAGMALGS GQMEPKWASV SSYCKRHGVN RGPVQCRKRW
101: SNLAGDYKKI KEWESQIKEE TESYWVMRND VRREKKLPGF FDKEVYDIVD GGVIPPAVPV LSLGLAPASD EGLLSDLDRR ESPEKLNSTP VAKSVTDVID
201: KEKQEACVAD QGRVKEKQPE AANVEGGSTS QEERKRKRTS FGEKEEEEEE GETKKMQNQL IEILERNGQL LAAQLEVQNL NLKLDREQRK DHGDSLVAVL
301: NKLADAVAKI ADKM
101: SNLAGDYKKI KEWESQIKEE TESYWVMRND VRREKKLPGF FDKEVYDIVD GGVIPPAVPV LSLGLAPASD EGLLSDLDRR ESPEKLNSTP VAKSVTDVID
201: KEKQEACVAD QGRVKEKQPE AANVEGGSTS QEERKRKRTS FGEKEEEEEE GETKKMQNQL IEILERNGQL LAAQLEVQNL NLKLDREQRK DHGDSLVAVL
301: NKLADAVAKI ADKM
Arabidopsis Description
ASR3Trihelix transcription factor ASR3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ20]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.