Factsheet for HORVU5Hr1G106480.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G014460.1
HORVU1Hr1G050960.7
HORVU5Hr1G124010.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33550.1	HORVU0Hr1G014460.1	AT1G32230.1	19548978
AT2G33550.1	HORVU1Hr1G050960.7	AT1G32230.1	19548978
AT2G33550.1	HORVU5Hr1G124010.1	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G450500.1	Wheat	plastid	75.16	64.72
TraesCS5B01G447700.1	Wheat	plastid	75.48	64.29
TraesCS5A01G443100.1	Wheat	plastid	72.26	62.4
KXG30289	Sorghum	plastid	56.77	50.43
Zm00001d050583_P001	Maize	plastid	56.45	47.43
Zm00001d016604_P001	Maize	plastid	54.84	46.45
CDX85279	Canola	cytosol	35.16	45.04
HORVU2Hr1G071100.8	Barley	cytosol	40.65	36.73
Solyc04g045430.2.1	Tomato	nucleus	36.13	35.78
Bra005486.1-P	Field mustard	nucleus	35.81	34.91
CDY17185	Canola	cytosol	35.81	34.91
AT2G33550.1	Thale cress	cytosol	34.84	34.39
CDY27959	Canola	cytosol	35.16	34.38
GSMUA_Achr8P00510_001	Banana	nucleus	35.16	34.06
Solyc09g015150.1.1	Tomato	nucleus, plastid	11.61	33.96
KRH36366	Soybean	nucleus	35.48	33.85
CDY37710	Canola	cytosol	34.52	33.54
VIT_01s0150g00050.t01	Wine grape	nucleus	36.45	33.24
KRG93139	Soybean	nucleus	33.87	32.92
CDY23727	Canola	cytosol	32.58	32.27
Bra021860.1-P	Field mustard	nucleus	32.58	31.56
Solyc01g065890.1.1	Tomato	cytosol	11.94	31.09
KRH01509	Soybean	nucleus	32.9	31.0
KRH45200	Soybean	nucleus	32.58	30.98
VIT_17s0000g00270.t01	Wine grape	nucleus	33.23	30.38
PGSC0003DMT400087461	Potato	nucleus	30.0	30.19
PGSC0003DMT400087793	Potato	nucleus	28.39	28.57
HORVU3Hr1G096240.1	Barley	nucleus	27.42	28.52
Os02t0516800-00	Rice	nucleus	40.97	28.48
Solyc01g065900.1.1	Tomato	nucleus	25.81	27.78
PGSC0003DMT400036757	Potato	nucleus	26.45	25.47
Solyc03g118230.1.1	Tomato	nucleus	27.1	25.23
PGSC0003DMT400087902	Potato	nucleus	20.32	24.9
KRH41057	Soybean	nucleus	24.84	23.19
KRH59736	Soybean	nucleus	25.48	21.18
HORVU4Hr1G002970.1	Barley	nucleus	18.39	17.12

Protein Annotations

EnsemblPlants:HORVU5Hr1G106480.1	EnsemblPlantsGene:HORVU5Hr1G106480	ncoils:Coil	PANTHER:PTHR33492	PANTHER:PTHR33492:SF1	PFAM:PF13837
SEG:seg	UniParc:UPI000B4744B7	UniProt:A0A287SMD1	MapMan:35.1	:	:

Description

No Description!

Coordinates

chrchr5H:-:624175693..624177547

Molecular Weight (calculated)

33388.4 Da

IEP (calculated)

4.582

GRAVY (calculated)

-0.830

Length

310 amino acids

Sequence
(BLAST)

001: AAAGATGEPA ATALEPKWAA VAEYCRRHGV ERGAVQCRKR WSNLAGDWKK IKEWERAAAG AREPSFWAMR NDARRERRLP GFFDREVYGI LEGRGRGVVV
101: GGSSGGDAVE EVGVGRMEED DDGEETGEEE EGRGKGKEVA VAVAVAVAVR ETVFDSGRPA GEEALFSEDE EEEDAETPEA TPAPPPAVIA LPISENSEAS
201: RQQQSAQQGT TTDRPKGQQG SNKTAGSPTL QQQSGQKRQR TGDGSEPRAE GMADKLLEIL ERNSQALAAQ LEVQNVNSER DREQRREQAN SLAVVLGRLA
301: DALGRIADKL

Best Arabidopsis Sequence Match ( AT5G51800.1 )
(BLAST)

001: MGETTKGDAT KPPPNQISSP KDSSLDHQAP NPSLLHHHHH HHQSFLPTPI FIPTVSSPGA PVIPKRPRFS TSSGLSPPQW KALPSPSTVP TASTISSSPT
101: PSTAVVTASS TETAGSSPPG QEATNSEKQQ QPKTESFQHK FRKGKYVSPV WKPNEMLWLA RAWRAQYQTQ GTGSGSGSVE GRGKTRAEKD REVAEYLNRH
201: GINRDSKIAG TKWDNMLGEF RKVYEWEKCG DQDKYGKSYF RLSPYERKQH RLPASFDEEV YQELALFMGP RVRAPTINRG GGGGATVTVA STPPSVEALP
301: PPLYPALMTS RDEYDIENNP IPSIGRGKRL ALSLVGDDHH PQYPYAHNIA RGSGLFSNKS LYNPFFEMIP SSSSSSSSLR DLRRIGKIRL TWEESVNLWA
401: EGEVDYGRIR VSGSSFLNAD ELTYLDDSMV ACTMESFQDG PLKGFSLDKF ISGQHLKVFG RQRSTSSSAP SPSVNVAGVF DRPQLQLSEP IYKSISTLEF
501: QDPSEHCLSK LRVPAGNLPS LFELARYLQE PPPENLRFPL RPDVYKDLPQ GKELFFSISS TELLDCRAIT YDIIGPIMSR LNSNNGFVIS SKDSLIPLWD
601: DCINRMVSKF CEMAILRKPD SSSCIENVQH QWPNVIGYVK GFGLWRGEEA DKVREGAADP SSLLAEKILW SYNDLPYILG YHAIGFTVTF CALSLSSQDR
701: VICTDLYSFN VSSPSDRIKA LVPCYRLASL LPLLADRCTT RPSCYNDFER IDRGDYVTEL TPHTVTRYYS SKRKWLGVKG IYDFLDQRVP HAEHLDMASE
801: KDLSLSFKPR GIRVKPRNID QLIDSLMCVT KALLALHDLS FMHRDMGWDN VMRSTATTTT TTDTDWFVCG FDAAVEAPQL NPHRPADKVV DNEEREDERG
901: RYAPEMERGL HAVKVDVWGV GYMIKTCGLS NVPKMLRDLQ GKCLEPNQEN RPTAADCFHH LLQVQSASTS SY

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FLH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.