Factsheet for TraesCS5A01G443100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G195400.4
TraesCS1B01G210300.4
TraesCS1D01G199200.1
TraesCS4A01G321300.1
TraesCS5B01G557500.2
TraesCS5D01G551800.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33550.1	TraesCS1A01G195400.4	AT1G32230.1	19548978
AT2G33550.1	TraesCS1B01G210300.4	AT1G32230.1	19548978
AT2G33550.1	TraesCS1D01G199200.1	AT1G32230.1	19548978
AT2G33550.1	TraesCS4A01G321300.1	AT1G32230.1	19548978
AT2G33550.1	TraesCS5B01G557500.2	AT1G32230.1	19548978
AT2G33550.1	TraesCS5D01G551800.3	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G447700.1	Wheat	plastid	91.92	90.66
TraesCS5D01G450500.1	Wheat	plastid	87.47	87.22
HORVU5Hr1G106480.1	Barley	cytosol, nucleus	62.4	72.26
KXG30289	Sorghum	plastid	59.05	60.74
Zm00001d050583_P001	Maize	plastid	58.5	56.91
Zm00001d016604_P001	Maize	plastid	57.66	56.56
TraesCS2A01G287600.2	Wheat	nucleus	45.13	47.79
CDX85279	Canola	cytosol	30.36	45.04
Solyc04g045430.2.1	Tomato	nucleus	36.77	42.17
VIT_01s0150g00050.t01	Wine grape	nucleus	39.55	41.76
Bra005486.1-P	Field mustard	nucleus	36.49	41.2
CDY17185	Canola	cytosol	36.49	41.2
CDY27959	Canola	cytosol	35.93	40.69
AT2G33550.1	Thale cress	cytosol	35.38	40.45
GSMUA_Achr8P00510_001	Banana	nucleus	35.93	40.31
Os02t0516800-00	Rice	nucleus	49.3	39.69
KRG93139	Soybean	nucleus	35.1	39.5
KRH36366	Soybean	nucleus	35.65	39.38
CDY23727	Canola	cytosol	33.98	38.98
KRH01509	Soybean	nucleus	35.38	38.6
CDY37710	Canola	cytosol	34.26	38.56
KRH45200	Soybean	nucleus	34.82	38.34
Bra021860.1-P	Field mustard	nucleus	33.98	38.12
VIT_17s0000g00270.t01	Wine grape	nucleus	34.82	36.87
Solyc09g015150.1.1	Tomato	nucleus, plastid	10.86	36.79
Solyc01g065890.1.1	Tomato	cytosol	11.7	35.29
PGSC0003DMT400087793	Potato	nucleus	30.08	35.06
PGSC0003DMT400087461	Potato	nucleus	30.08	35.06
PGSC0003DMT400036757	Potato	nucleus	30.08	33.54
TraesCS3A01G441300.1	Wheat	nucleus	27.58	33.33
Solyc03g118230.1.1	Tomato	nucleus	29.8	32.13
PGSC0003DMT400087902	Potato	nucleus	22.56	32.02
Solyc01g065900.1.1	Tomato	nucleus	23.4	29.17
KRH41057	Soybean	nucleus	26.74	28.92
KRH59736	Soybean	nucleus	27.86	26.81
TraesCS4A01G294700.2	Wheat	nucleus	17.83	19.39
TraesCS2A01G549300.1	Wheat	nucleus, plastid	20.89	18.43

Protein Annotations

EnsemblPlants:TraesCS5A01G443100.1	EnsemblPlantsGene:TraesCS5A01G443100	InterPro:IPR017877	InterPro:Myb-like_dom	ncoils:Coil	PANTHER:PTHR33492
PANTHER:PTHR33492:SF1	PFAM:PF13837	PFscan:PS50090	SEG:seg	MapMan:35.1	:

Description

No Description!

Coordinates

chr5A:-:623214780..623215859

Molecular Weight (calculated)

38454.8 Da

IEP (calculated)

5.085

GRAVY (calculated)

-0.709

Length

359 amino acids

Sequence
(BLAST)

001: MSSAGDPAGA AAAAAPNPSV RAPRLPRWTR QEILVLIEGK RMVEVRGGVR GGRGRLAAAA AAGATGEGAA AALEPKWAAV AEYCRRHGVE RGAVQCRKRW
101: SNLAGDWKKI KEWERAAAGA REPSFWAMRN DARRERRLPG FFDREVYGIL EGRGRGVVAG SSSGGGAAVE EVGVVRMEED DDEETGEEEE ERGKGKEVAV
201: AVAVETVFDS GRPAGEEVLF SEEEDAETPE ATPAPPPAVI ALPISENSEA SRQQSAQQGT TKDRQGGHQG STKTGGSPTL QQSGQKRQRT GNDSEPRAEG
301: IADKLLEILE RNSQIMTAQL EAQNMNSERD REERREQANS LAVVLGRLAD ALGRIADKL

Best Arabidopsis Sequence Match ( AT5G51800.1 )
(BLAST)

001: MGETTKGDAT KPPPNQISSP KDSSLDHQAP NPSLLHHHHH HHQSFLPTPI FIPTVSSPGA PVIPKRPRFS TSSGLSPPQW KALPSPSTVP TASTISSSPT
101: PSTAVVTASS TETAGSSPPG QEATNSEKQQ QPKTESFQHK FRKGKYVSPV WKPNEMLWLA RAWRAQYQTQ GTGSGSGSVE GRGKTRAEKD REVAEYLNRH
201: GINRDSKIAG TKWDNMLGEF RKVYEWEKCG DQDKYGKSYF RLSPYERKQH RLPASFDEEV YQELALFMGP RVRAPTINRG GGGGATVTVA STPPSVEALP
301: PPLYPALMTS RDEYDIENNP IPSIGRGKRL ALSLVGDDHH PQYPYAHNIA RGSGLFSNKS LYNPFFEMIP SSSSSSSSLR DLRRIGKIRL TWEESVNLWA
401: EGEVDYGRIR VSGSSFLNAD ELTYLDDSMV ACTMESFQDG PLKGFSLDKF ISGQHLKVFG RQRSTSSSAP SPSVNVAGVF DRPQLQLSEP IYKSISTLEF
501: QDPSEHCLSK LRVPAGNLPS LFELARYLQE PPPENLRFPL RPDVYKDLPQ GKELFFSISS TELLDCRAIT YDIIGPIMSR LNSNNGFVIS SKDSLIPLWD
601: DCINRMVSKF CEMAILRKPD SSSCIENVQH QWPNVIGYVK GFGLWRGEEA DKVREGAADP SSLLAEKILW SYNDLPYILG YHAIGFTVTF CALSLSSQDR
701: VICTDLYSFN VSSPSDRIKA LVPCYRLASL LPLLADRCTT RPSCYNDFER IDRGDYVTEL TPHTVTRYYS SKRKWLGVKG IYDFLDQRVP HAEHLDMASE
801: KDLSLSFKPR GIRVKPRNID QLIDSLMCVT KALLALHDLS FMHRDMGWDN VMRSTATTTT TTDTDWFVCG FDAAVEAPQL NPHRPADKVV DNEEREDERG
901: RYAPEMERGL HAVKVDVWGV GYMIKTCGLS NVPKMLRDLQ GKCLEPNQEN RPTAADCFHH LLQVQSASTS SY

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FLH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.