Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G33550.1 | CDY22597 | AT1G32230.1 | 19548978 |
| AT2G33550.1 | CDY41739 | AT1G32230.1 | 19548978 |
| AT2G33550.1 | CDY43007 | AT1G32230.1 | 19548978 |
| AT2G33550.1 | CDY60257 | AT1G32230.1 | 19548978 |
| AT2G33550.1 | CDY67026 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27959 | Canola | cytosol | 97.52 | 74.45 |
| CDY17185 | Canola | cytosol | 96.69 | 73.58 |
| Os04t0397500-00 | Rice | cytosol, nucleus | 14.88 | 55.38 |
| AT2G33550.1 | Thale cress | cytosol | 66.12 | 50.96 |
| CDY37710 | Canola | cytosol | 64.46 | 48.9 |
| CDY23727 | Canola | cytosol | 62.4 | 48.24 |
| HORVU5Hr1G106480.1 | Barley | cytosol, nucleus | 45.04 | 35.16 |
| GSMUA_Achr10P... | Banana | nucleus | 48.76 | 34.71 |
| KXG30289 | Sorghum | plastid | 49.17 | 34.1 |
| HORVU2Hr1G071100.8 | Barley | cytosol | 46.28 | 32.65 |
| TraesCS2B01G304400.1 | Wheat | nucleus | 46.69 | 32.47 |
| VIT_17s0000g00270.t01 | Wine grape | nucleus | 45.45 | 32.45 |
| Zm00001d016604_P001 | Maize | plastid | 48.76 | 32.24 |
| TraesCS2A01G287600.2 | Wheat | nucleus | 45.04 | 32.15 |
| TraesCS2D01G286000.2 | Wheat | nucleus | 45.04 | 31.14 |
| Zm00001d025275_P001 | Maize | mitochondrion, nucleus | 42.98 | 31.14 |
| KXG26157 | Sorghum | nucleus | 46.28 | 31.11 |
| GSMUA_Achr6P16420_001 | Banana | golgi, nucleus, plastid | 28.51 | 30.94 |
| Zm00001d003889_P001 | Maize | nucleus | 43.8 | 30.37 |
| TraesCS5A01G443100.1 | Wheat | plastid | 45.04 | 30.36 |
| TraesCS5D01G450500.1 | Wheat | plastid | 44.21 | 29.72 |
| TraesCS5B01G447700.1 | Wheat | plastid | 44.21 | 29.4 |
| Zm00001d050583_P001 | Maize | plastid | 44.63 | 29.27 |
| Zm00001d042271_P001 | Maize | nucleus, plastid | 32.23 | 28.16 |
| OQU88149 | Sorghum | nucleus | 34.71 | 28.0 |
| GSMUA_Achr8P00510_001 | Banana | nucleus | 36.36 | 27.5 |
| TraesCS3D01G434100.1 | Wheat | nucleus | 32.64 | 27.05 |
| TraesCS3A01G441300.1 | Wheat | nucleus | 33.06 | 26.94 |
| KRH41057 | Soybean | nucleus | 36.36 | 26.51 |
| HORVU3Hr1G096240.1 | Barley | nucleus | 32.23 | 26.17 |
| PGSC0003DMT400036757 | Potato | nucleus | 34.3 | 25.78 |
| Solyc03g118230.1.1 | Tomato | nucleus | 34.71 | 25.23 |
| KRH59736 | Soybean | nucleus | 35.95 | 23.32 |
| TraesCS3B01G475300.1 | Wheat | nucleus, plastid | 23.97 | 19.21 |
| Os02t0516800-00 | Rice | nucleus | 30.58 | 16.59 |
| CDX98246 | Canola | nucleus | 21.9 | 14.36 |
| CDY02375 | Canola | nucleus | 20.66 | 13.74 |
| CDY49546 | Canola | nucleus | 20.66 | 13.51 |
| CDX77554 | Canola | nucleus | 21.49 | 13.47 |
Protein Annotations
| EnsemblPlants:CDX85279 | EnsemblPlantsGene:GSBRNA2T00142929001 | ncoils:Coil | PANTHER:PTHR21654 | PANTHER:PTHR21654:SF51 | PFAM:PF13837 |
| ProteinID:CDX85279 | ProteinID:CDX85279.1 | UniParc:UPI0004EDFDB2 | MapMan:35.1 | : | : |
Description
BnaC07g25900D
Coordinates
chrLK031841:-:780445..781702
Molecular Weight (calculated)
26751.5 Da
IEP (calculated)
6.315
GRAVY (calculated)
-0.769
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MALGSGQMEP KWASVSSYCR LHGVNRGPVQ CRKRWSNLAG DYKKIKEWES QVKEEAESYW VMRNDVRRER KLPGFFDKEV YDIVDGGVVP PANPVLALGL
101: APASTSAEEP ARSVEKLSSA SAPKSLIDVI DKEKQAACEA ADQGGMKERH PEAANPEAAS TSQEERKRKR TSSGDEEGEA TKSRQDQLIE ILERNGQLLA
201: AQLEVQNTNL KLDREQRKDH GDNLVAVLNK LADAVAKIAD KL
101: APASTSAEEP ARSVEKLSSA SAPKSLIDVI DKEKQAACEA ADQGGMKERH PEAANPEAAS TSQEERKRKR TSSGDEEGEA TKSRQDQLIE ILERNGQLLA
201: AQLEVQNTNL KLDREQRKDH GDNLVAVLNK LADAVAKIAD KL
001: MALEQLGLGV SAVDGGENSS APSNDGGDDG VKTARLPRWT RQEILVLIQG KRVAENRVRR GRAAGMALGS GQMEPKWASV SSYCKRHGVN RGPVQCRKRW
101: SNLAGDYKKI KEWESQIKEE TESYWVMRND VRREKKLPGF FDKEVYDIVD GGVIPPAVPV LSLGLAPASD EGLLSDLDRR ESPEKLNSTP VAKSVTDVID
201: KEKQEACVAD QGRVKEKQPE AANVEGGSTS QEERKRKRTS FGEKEEEEEE GETKKMQNQL IEILERNGQL LAAQLEVQNL NLKLDREQRK DHGDSLVAVL
301: NKLADAVAKI ADKM
101: SNLAGDYKKI KEWESQIKEE TESYWVMRND VRREKKLPGF FDKEVYDIVD GGVIPPAVPV LSLGLAPASD EGLLSDLDRR ESPEKLNSTP VAKSVTDVID
201: KEKQEACVAD QGRVKEKQPE AANVEGGSTS QEERKRKRTS FGEKEEEEEE GETKKMQNQL IEILERNGQL LAAQLEVQNL NLKLDREQRK DHGDSLVAVL
301: NKLADAVAKI ADKM
Arabidopsis Description
ASR3Trihelix transcription factor ASR3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ20]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.