Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400038368 | |
| PGSC0003DMT400043197 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G33550.1 | PGSC0003DMT400038368 | AT1G32230.1 | 19548978 |
| AT2G33550.1 | PGSC0003DMT400043197 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g118230.1.1 | Tomato | nucleus | 75.78 | 73.27 |
| Os04t0397500-00 | Rice | cytosol, nucleus | 9.01 | 44.62 |
| VIT_17s0000g00270.t01 | Wine grape | nucleus | 40.06 | 38.05 |
| AT2G33550.1 | Thale cress | cytosol | 35.4 | 36.31 |
| CDY27959 | Canola | cytosol | 34.47 | 35.02 |
| CDY23727 | Canola | cytosol | 33.85 | 34.82 |
| CDY37710 | Canola | cytosol | 34.47 | 34.8 |
| Bra021860.1-P | Field mustard | nucleus | 34.47 | 34.69 |
| Bra005486.1-P | Field mustard | nucleus | 34.16 | 34.59 |
| CDY17185 | Canola | cytosol | 34.16 | 34.59 |
| CDX85279 | Canola | cytosol | 25.78 | 34.3 |
| GSMUA_Achr10P... | Banana | nucleus | 35.09 | 33.24 |
| PGSC0003DMT400087793 | Potato | nucleus | 30.75 | 32.14 |
| PGSC0003DMT400087461 | Potato | nucleus | 30.43 | 31.82 |
| KXG30289 | Sorghum | plastid | 33.23 | 30.66 |
| Zm00001d042271_P001 | Maize | nucleus, plastid | 26.09 | 30.32 |
| KRH41057 | Soybean | nucleus | 31.06 | 30.12 |
| TraesCS5A01G443100.1 | Wheat | plastid | 33.54 | 30.08 |
| Zm00001d025275_P001 | Maize | mitochondrion, nucleus | 30.75 | 29.64 |
| TraesCS2A01G287600.2 | Wheat | nucleus | 30.75 | 29.2 |
| KXG26157 | Sorghum | nucleus | 32.61 | 29.17 |
| TraesCS5D01G450500.1 | Wheat | plastid | 32.3 | 28.89 |
| GSMUA_Achr8P00510_001 | Banana | nucleus | 28.57 | 28.75 |
| TraesCS5B01G447700.1 | Wheat | plastid | 32.3 | 28.57 |
| HORVU2Hr1G071100.8 | Barley | cytosol | 30.43 | 28.57 |
| Zm00001d003889_P001 | Maize | nucleus | 30.75 | 28.37 |
| OQU88149 | Sorghum | nucleus | 26.09 | 28.0 |
| TraesCS2D01G286000.2 | Wheat | nucleus | 30.43 | 28.0 |
| Zm00001d050583_P001 | Maize | plastid | 31.99 | 27.91 |
| TraesCS2B01G304400.1 | Wheat | nucleus | 30.12 | 27.87 |
| HORVU3Hr1G096240.1 | Barley | nucleus | 25.78 | 27.85 |
| PGSC0003DMT400087902 | Potato | nucleus | 21.74 | 27.67 |
| TraesCS3D01G434100.1 | Wheat | nucleus | 24.84 | 27.4 |
| GSMUA_Achr6P16420_001 | Banana | golgi, nucleus, plastid | 18.94 | 27.35 |
| TraesCS3A01G441300.1 | Wheat | nucleus | 25.16 | 27.27 |
| Zm00001d016604_P001 | Maize | plastid | 30.75 | 27.05 |
| KRH59736 | Soybean | nucleus | 30.75 | 26.54 |
| HORVU5Hr1G106480.1 | Barley | cytosol, nucleus | 25.47 | 26.45 |
| TraesCS3B01G475300.1 | Wheat | nucleus, plastid | 21.74 | 23.18 |
| PGSC0003DMT400033627 | Potato | nucleus | 19.25 | 18.34 |
| Os02t0516800-00 | Rice | nucleus | 23.6 | 17.04 |
| PGSC0003DMT400054486 | Potato | nucleus | 6.21 | 15.5 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400036757 | EnsemblPlantsGene:PGSC0003DMG400014176 | Gene3D:1.10.10.60 | InterPro:IPR017877 | InterPro:Myb-like_dom | ncoils:Coil |
| PANTHER:PTHR21654 | PANTHER:PTHR21654:SF51 | PFAM:PF13837 | PFscan:PS50090 | PGSC:PGSC0003DMG400014176 | SEG:seg |
| UniParc:UPI00029558CA | UniProt:M1B465 | MapMan:35.1 | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400014176]
Coordinates
chr3:+:57794652..57795997
Molecular Weight (calculated)
36592.6 Da
IEP (calculated)
5.384
GRAVY (calculated)
-1.025
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MNENTAMLAD GQQKPTEDGK SKTPRHSRWT RQETLVLIQG KKIAEERAHR GRKSTSVFGS DKPEPKWDSV SSYCRQHGAD RGPVQCRKRW SNMISDFKKI
101: KTWETQTNGS SESYWIISND LRREKRLPGS FDREVYNVLD GKEFTAEAYQ LALVTITTDE KLDYGVETVE EEEAEEGEEE NDNVSHTGEY TMEDDVMPPA
201: AEEVGSSPLK EHIVIDKKAK SIPSPVPRSA EGEQPGSDFW NSPMFKDRVK KRRLSPDGCI DSNLGSKLLK TLEQNTNMLH SQLDAQMENR QRDREQQKEQ
301: TNSLIAVLNK VADAVARVAD KM
101: KTWETQTNGS SESYWIISND LRREKRLPGS FDREVYNVLD GKEFTAEAYQ LALVTITTDE KLDYGVETVE EEEAEEGEEE NDNVSHTGEY TMEDDVMPPA
201: AEEVGSSPLK EHIVIDKKAK SIPSPVPRSA EGEQPGSDFW NSPMFKDRVK KRRLSPDGCI DSNLGSKLLK TLEQNTNMLH SQLDAQMENR QRDREQQKEQ
301: TNSLIAVLNK VADAVARVAD KM
001: MALEQLGLGV SAVDGGENSS APSNDGGDDG VKTARLPRWT RQEILVLIQG KRVAENRVRR GRAAGMALGS GQMEPKWASV SSYCKRHGVN RGPVQCRKRW
101: SNLAGDYKKI KEWESQIKEE TESYWVMRND VRREKKLPGF FDKEVYDIVD GGVIPPAVPV LSLGLAPASD EGLLSDLDRR ESPEKLNSTP VAKSVTDVID
201: KEKQEACVAD QGRVKEKQPE AANVEGGSTS QEERKRKRTS FGEKEEEEEE GETKKMQNQL IEILERNGQL LAAQLEVQNL NLKLDREQRK DHGDSLVAVL
301: NKLADAVAKI ADKM
101: SNLAGDYKKI KEWESQIKEE TESYWVMRND VRREKKLPGF FDKEVYDIVD GGVIPPAVPV LSLGLAPASD EGLLSDLDRR ESPEKLNSTP VAKSVTDVID
201: KEKQEACVAD QGRVKEKQPE AANVEGGSTS QEERKRKRTS FGEKEEEEEE GETKKMQNQL IEILERNGQL LAAQLEVQNL NLKLDREQRK DHGDSLVAVL
301: NKLADAVAKI ADKM
Arabidopsis Description
ASR3Trihelix transcription factor ASR3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ20]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.