Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G33550.1 | KRH39574 | AT1G32230.1 | 19548978 |
| AT2G33550.1 | KRH74370 | AT1G32230.1 | 19548978 |
| AT2G33550.1 | KRH74373 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH41057 | Soybean | nucleus | 54.96 | 61.75 |
| Os04t0397500-00 | Rice | cytosol, nucleus | 7.24 | 41.54 |
| CDX85279 | Canola | cytosol | 23.32 | 35.95 |
| VIT_17s0000g00270.t01 | Wine grape | nucleus | 31.37 | 34.51 |
| CDY23727 | Canola | cytosol | 28.42 | 33.87 |
| Bra021860.1-P | Field mustard | nucleus | 28.95 | 33.75 |
| KRG93139 | Soybean | nucleus | 28.69 | 33.54 |
| KRH36366 | Soybean | nucleus | 29.22 | 33.54 |
| AT2G33550.1 | Thale cress | cytosol | 28.15 | 33.44 |
| Bra005486.1-P | Field mustard | nucleus | 28.15 | 33.02 |
| CDY17185 | Canola | cytosol | 28.15 | 33.02 |
| CDY37710 | Canola | cytosol | 28.15 | 32.92 |
| CDY27959 | Canola | cytosol | 27.88 | 32.81 |
| GSMUA_Achr10P... | Banana | nucleus | 29.49 | 32.35 |
| KRH01509 | Soybean | nucleus | 28.15 | 31.91 |
| KRH45200 | Soybean | nucleus | 27.08 | 30.98 |
| KXG30289 | Sorghum | plastid | 28.95 | 30.95 |
| PGSC0003DMT400036757 | Potato | nucleus | 26.54 | 30.75 |
| Solyc03g118230.1.1 | Tomato | nucleus | 27.35 | 30.63 |
| Zm00001d016604_P001 | Maize | plastid | 28.95 | 29.51 |
| TraesCS2A01G287600.2 | Wheat | nucleus | 26.54 | 29.2 |
| Zm00001d050583_P001 | Maize | plastid | 28.42 | 28.73 |
| TraesCS2D01G286000.2 | Wheat | nucleus | 26.81 | 28.57 |
| TraesCS2B01G304400.1 | Wheat | nucleus | 26.27 | 28.16 |
| TraesCS5D01G450500.1 | Wheat | plastid | 27.08 | 28.06 |
| TraesCS5A01G443100.1 | Wheat | plastid | 26.81 | 27.86 |
| Zm00001d025275_P001 | Maize | mitochondrion, nucleus | 24.93 | 27.84 |
| HORVU2Hr1G071100.8 | Barley | cytosol | 25.47 | 27.7 |
| TraesCS5B01G447700.1 | Wheat | plastid | 26.81 | 27.47 |
| GSMUA_Achr6P16420_001 | Banana | golgi, nucleus, plastid | 16.35 | 27.35 |
| GSMUA_Achr8P00510_001 | Banana | nucleus | 22.79 | 26.56 |
| KXG26157 | Sorghum | nucleus | 25.47 | 26.39 |
| Zm00001d003889_P001 | Maize | nucleus | 24.66 | 26.36 |
| Zm00001d042271_P001 | Maize | nucleus, plastid | 19.3 | 25.99 |
| HORVU5Hr1G106480.1 | Barley | cytosol, nucleus | 21.18 | 25.48 |
| HORVU3Hr1G096240.1 | Barley | nucleus | 19.84 | 24.83 |
| TraesCS3D01G434100.1 | Wheat | nucleus | 19.3 | 24.66 |
| TraesCS3A01G441300.1 | Wheat | nucleus | 19.57 | 24.58 |
| OQU88149 | Sorghum | nucleus | 19.03 | 23.67 |
| TraesCS3B01G475300.1 | Wheat | nucleus, plastid | 16.09 | 19.87 |
| Os02t0516800-00 | Rice | nucleus | 21.18 | 17.71 |
| KRG91999 | Soybean | nucleus | 15.01 | 16.92 |
| KRH34785 | Soybean | cytosol | 1.88 | 9.46 |
Protein Annotations
| EMBL:ACUP02003339 | EnsemblPlants:KRH59736 | EnsemblPlantsGene:GLYMA_05G200400 | EntrezGene:100793052 | Gene3D:1.10.10.60 | InterPro:IPR017877 |
| InterPro:Myb-like_dom | ncoils:Coil | PANTHER:PTHR21654 | PANTHER:PTHR21654:SF51 | PFAM:PF13837 | PFscan:PS50090 |
| ProteinID:KRH59736 | ProteinID:KRH59736.1 | SEG:seg | UniParc:UPI0002339B12 | UniProt:K7KS83 | MapMan:35.1 |
Description
hypothetical protein
Coordinates
chr5:+:38413500..38416207
Molecular Weight (calculated)
42045.8 Da
IEP (calculated)
5.176
GRAVY (calculated)
-0.783
Length
373 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQDSEKICE GASESPTTPV GTQAPAPAPA PAPPESEPKS TSTQRIKATR HPRWTRQETL VLIESKKMVE NGEQVCRFRS ASGCVQTDPK WDMVSSLCQQ
101: RGVKRGAVQC RKRWGNLLTD FRKIKKWESG VKEVESESFW IMRNDVRKEK KLPGFFDSVV YNVLDGGVCT TVAFPLTLVK MVPKGENGVV VEGVSHHQEQ
201: CKENEEEEEE EEEEEEEDEA IVDAEKMGWS TEEENMETNI NGFLKTPTGL LIKEKGIAGR LKRTPILTLP TPEKLQQQPS YQGNYDPGFQ KEPMFQEGYK
301: RKRLPLDSSE DCTDFNSNIT NLLRRNSDML KAHLGAQNIN YQLARDQQKQ QTDIIVAALG KLTDALTKIA DKL
101: RGVKRGAVQC RKRWGNLLTD FRKIKKWESG VKEVESESFW IMRNDVRKEK KLPGFFDSVV YNVLDGGVCT TVAFPLTLVK MVPKGENGVV VEGVSHHQEQ
201: CKENEEEEEE EEEEEEEDEA IVDAEKMGWS TEEENMETNI NGFLKTPTGL LIKEKGIAGR LKRTPILTLP TPEKLQQQPS YQGNYDPGFQ KEPMFQEGYK
301: RKRLPLDSSE DCTDFNSNIT NLLRRNSDML KAHLGAQNIN YQLARDQQKQ QTDIIVAALG KLTDALTKIA DKL
001: MADADPSSGE QIVMRECRKG NWTVSETLVL IEAKKMDDQR RVRRSEKQPE GRNKPAELRW KWIEEYCWRR GCYRNQNQCN DKWDNLMRDY KKIREYERSR
101: VESSFNTVTS SSYWKMDKTE RKEKNLPSNM LPQIYDVLSE LVDRKTLPSS SSAAAAVGNG NGGQILRVCQ QSLGFVAPMM AQPMHQIPTT IVLSLPPPPP
201: QSLSLSLPSP PQPPPSSSFH AEPIPPTVGT SSTKRRRTTP GETTAGGERE VEEDAVGVAL SRCTSVITQV IRENEEGQER RHKEVVRLQE RRLKIEESKT
301: EINRQGMNGL VDAINQLASS ILALASSSCH NNRNHQGGPP
101: VESSFNTVTS SSYWKMDKTE RKEKNLPSNM LPQIYDVLSE LVDRKTLPSS SSAAAAVGNG NGGQILRVCQ QSLGFVAPMM AQPMHQIPTT IVLSLPPPPP
201: QSLSLSLPSP PQPPPSSSFH AEPIPPTVGT SSTKRRRTTP GETTAGGERE VEEDAVGVAL SRCTSVITQV IRENEEGQER RHKEVVRLQE RRLKIEESKT
301: EINRQGMNGL VDAINQLASS ILALASSSCH NNRNHQGGPP
Arabidopsis Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9ZQN7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.