Subcellular Localization
min:
: max
Winner_takes_all: golgi, plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- golgi 1
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 62.33 | 40.88 |
| CDX85279 | Canola | cytosol | 30.94 | 28.51 |
| GSMUA_Achr8P00510_001 | Banana | nucleus | 39.01 | 27.19 |
| VIT_01s0150g00050.t01 | Wine grape | nucleus | 39.01 | 25.59 |
| KRH01509 | Soybean | nucleus | 37.22 | 25.23 |
| KRG93139 | Soybean | nucleus | 35.43 | 24.76 |
| KRH36366 | Soybean | nucleus | 35.87 | 24.62 |
| KRH45200 | Soybean | nucleus | 35.43 | 24.23 |
| AT2G33550.1 | Thale cress | cytosol | 34.08 | 24.2 |
| VIT_17s0000g00270.t01 | Wine grape | nucleus | 35.43 | 23.3 |
| CDY37710 | Canola | cytosol | 31.84 | 22.26 |
| CDY27959 | Canola | cytosol | 31.39 | 22.08 |
| Bra005486.1-P | Field mustard | nucleus | 30.94 | 21.7 |
| CDY17185 | Canola | cytosol | 30.94 | 21.7 |
| CDY23727 | Canola | cytosol | 30.04 | 21.41 |
| Solyc04g045430.2.1 | Tomato | nucleus | 30.04 | 21.41 |
| Bra021860.1-P | Field mustard | nucleus | 28.7 | 20.0 |
| PGSC0003DMT400087461 | Potato | nucleus | 27.35 | 19.81 |
| PGSC0003DMT400087793 | Potato | nucleus | 27.35 | 19.81 |
| PGSC0003DMT400036757 | Potato | nucleus | 27.35 | 18.94 |
| Solyc03g118230.1.1 | Tomato | nucleus | 28.25 | 18.92 |
| KRH41057 | Soybean | nucleus | 26.91 | 18.07 |
| Solyc01g065900.1.1 | Tomato | nucleus | 23.32 | 18.06 |
| KRH59736 | Soybean | nucleus | 27.35 | 16.35 |
| Solyc09g015150.1.1 | Tomato | nucleus, plastid | 7.17 | 15.09 |
| PGSC0003DMT400087902 | Potato | nucleus | 11.21 | 9.88 |
| Solyc01g065890.1.1 | Tomato | cytosol | 4.48 | 8.4 |
| GSMUA_Achr4P32040_001 | Banana | nucleus | 10.76 | 7.04 |
| GSMUA_Achr5P02140_001 | Banana | nucleus | 8.97 | 6.41 |
| GSMUA_AchrUn_... | Banana | nucleus, plastid | 11.66 | 6.09 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P16420_001 | EnsemblPlants:GSMUA_Achr6T16420_001 | EnsemblPlantsGene:GSMUA_Achr6G16420_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR21654 | PANTHER:PTHR21654:SF51 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002963372 | UniProt:M0T7J0 |
| MapMan:35.1 | : | : | : | : | : |
Description
Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G16420_001]
Coordinates
chr6:+:10932255..10934871
Molecular Weight (calculated)
24625.8 Da
IEP (calculated)
4.276
GRAVY (calculated)
-0.636
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSDLRREKR LPGFFDREVY DILDGAAVAA VAEEEGKNGS GPAAAAGAEE EEAVFDSGRT AAEDGLFSDF DEEKEAEEEE EEEDSAPPLQ PLFLIHLGLL
101: VLLIFLFVAL LLCAEKKCES SQQGGSDRAT TKDKQQDYNP EKGSPLREGQ KRRRTSPEGA EDSDLQNRLI KVLEMNSRML TAQLEAQNIN CQLDRDQRKD
201: QTNSLLAVLG KLADALGRIA DKL
101: VLLIFLFVAL LLCAEKKCES SQQGGSDRAT TKDKQQDYNP EKGSPLREGQ KRRRTSPEGA EDSDLQNRLI KVLEMNSRML TAQLEAQNIN CQLDRDQRKD
201: QTNSLLAVLG KLADALGRIA DKL
001: MALEQLGLGV SAVDGGENSS APSNDGGDDG VKTARLPRWT RQEILVLIQG KRVAENRVRR GRAAGMALGS GQMEPKWASV SSYCKRHGVN RGPVQCRKRW
101: SNLAGDYKKI KEWESQIKEE TESYWVMRND VRREKKLPGF FDKEVYDIVD GGVIPPAVPV LSLGLAPASD EGLLSDLDRR ESPEKLNSTP VAKSVTDVID
201: KEKQEACVAD QGRVKEKQPE AANVEGGSTS QEERKRKRTS FGEKEEEEEE GETKKMQNQL IEILERNGQL LAAQLEVQNL NLKLDREQRK DHGDSLVAVL
301: NKLADAVAKI ADKM
101: SNLAGDYKKI KEWESQIKEE TESYWVMRND VRREKKLPGF FDKEVYDIVD GGVIPPAVPV LSLGLAPASD EGLLSDLDRR ESPEKLNSTP VAKSVTDVID
201: KEKQEACVAD QGRVKEKQPE AANVEGGSTS QEERKRKRTS FGEKEEEEEE GETKKMQNQL IEILERNGQL LAAQLEVQNL NLKLDREQRK DHGDSLVAVL
301: NKLADAVAKI ADKM
Arabidopsis Description
ASR3Trihelix transcription factor ASR3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ20]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.