Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P14660_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 63.27 | 59.82 |
| GSMUA_Achr2P18060_001 | Banana | nucleus | 64.42 | 58.26 |
| GSMUA_Achr5P14120_001 | Banana | nucleus | 56.73 | 52.12 |
| GSMUA_Achr4P19000_001 | Banana | nucleus | 38.85 | 48.21 |
| TraesCS4A01G321300.1 | Wheat | nucleus | 45.96 | 42.0 |
| HORVU5Hr1G124010.1 | Barley | nucleus | 45.38 | 40.76 |
| TraesCS5D01G551800.3 | Wheat | nucleus | 45.19 | 40.66 |
| TraesCS5B01G557500.2 | Wheat | nucleus | 45.19 | 40.66 |
| EER90487 | Sorghum | nucleus | 43.27 | 39.27 |
| TraesCS1B01G210300.4 | Wheat | peroxisome | 43.65 | 38.54 |
| TraesCS1A01G195400.4 | Wheat | cytosol | 43.85 | 38.51 |
| TraesCS1D01G199200.1 | Wheat | cytosol, nucleus, plastid | 43.46 | 38.18 |
| Os10t0577800-01 | Rice | nucleus | 43.27 | 38.07 |
| Os03t0854800-03 | Rice | nucleus | 42.69 | 38.01 |
| KXG38822 | Sorghum | nucleus | 43.46 | 37.98 |
| Zm00001d030110_P001 | Maize | mitochondrion, nucleus | 42.5 | 37.08 |
| HORVU1Hr1G050960.7 | Barley | nucleus | 43.08 | 36.78 |
| Zm00001d014423_P002 | Maize | nucleus | 42.88 | 36.38 |
| HORVU0Hr1G014460.1 | Barley | nucleus | 37.12 | 33.45 |
| Zm00001d012821_P003 | Maize | extracellular, vacuole | 42.12 | 33.38 |
| PGSC0003DMT400038368 | Potato | nucleus | 36.15 | 31.92 |
| VIT_02s0012g01920.t01 | Wine grape | cytosol | 32.69 | 31.89 |
| CDY60257 | Canola | cytosol | 20.0 | 31.8 |
| Solyc08g076420.2.1 | Tomato | nucleus | 36.15 | 31.49 |
| VIT_02s0012g01930.t01 | Wine grape | nucleus | 37.5 | 31.3 |
| Solyc08g005270.2.1 | Tomato | nucleus | 35.77 | 31.0 |
| Bra023252.1-P | Field mustard | nucleus | 27.69 | 29.88 |
| CDY22597 | Canola | nucleus | 31.15 | 29.78 |
| CDY67026 | Canola | nucleus | 31.35 | 29.64 |
| Bra035511.1-P | Field mustard | cytosol | 31.73 | 29.57 |
| KRH74370 | Soybean | mitochondrion, nucleus, plastid | 33.08 | 29.5 |
| CDY32124 | Canola | nucleus | 30.0 | 29.43 |
| GSMUA_Achr5P03800_001 | Banana | cytosol | 9.62 | 29.41 |
| KRH39574 | Soybean | mitochondrion, nucleus, plastid | 32.69 | 29.16 |
| Bra017317.1-P | Field mustard | nucleus | 29.62 | 29.06 |
| AT1G32230.1 | Thale cress | nucleus | 32.69 | 28.86 |
| CDY43007 | Canola | nucleus | 31.35 | 28.06 |
| PGSC0003DMT400043197 | Potato | nucleus | 31.73 | 27.78 |
| Bra005336.1-P | Field mustard | cytosol, nucleus, plastid | 27.88 | 27.67 |
| CDX84199 | Canola | cytosol, nucleus, plastid | 26.15 | 27.59 |
| AT2G35510.3 | Thale cress | cytosol | 30.0 | 27.46 |
| CDY41739 | Canola | cytosol | 28.65 | 27.09 |
| CDY31694 | Canola | nucleus | 27.5 | 27.08 |
| Solyc06g066330.2.1 | Tomato | nucleus | 30.77 | 26.94 |
| GSMUA_Achr7P27570_001 | Banana | cytosol, nucleus, plastid | 17.69 | 24.08 |
| GSMUA_Achr4P27510_001 | Banana | cytosol | 13.27 | 23.96 |
| GSMUA_Achr5P08960_001 | Banana | mitochondrion, nucleus | 21.73 | 23.69 |
| KRH74373 | Soybean | mitochondrion | 19.23 | 20.96 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P17920_001 | EnsemblPlants:GSMUA_Achr11T17920_001 | EnsemblPlantsGene:GSMUA_Achr11G17920_001 | Gene3D:3.90.228.10 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0003950 | GO:GO:0016740 | InterPro:IPR012317 | InterPro:Poly(ADP-ribose)pol_cat_dom | InterPro:RST | PANTHER:PTHR32263 |
| PANTHER:PTHR32263:SF4 | PFAM:PF12174 | PFscan:PS51059 | SUPFAM:SSF56399 | UniParc:UPI00029583F7 | UniProt:M0RT72 |
| MapMan:35.1 | : | : | : | : | : |
Description
RCD1, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G17920_001]
Coordinates
chr11:-:19462267..19467235
Molecular Weight (calculated)
58954.7 Da
IEP (calculated)
8.036
GRAVY (calculated)
-0.393
Length
520 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQKNVKVLD KGEKCDLKRK RDSAVYVTND SHGLVAHPHT AVQSSLKVYT GMSCKTGLIC YPGNHIVKNY RNFIKSGLPH RVLFYENDQW EDFPENIVHL
101: VQDDFRSKKG ITEAGYQNQH FLLDFIHMVC VILQTGLVKP VAWIDDHGKS FFPELHSHHD QNTYAEVNEV VGENDPGSVF PLNIPAFGAC QAPAGGHHVN
201: RAVQNMLLQG LGKFIDPKNI VGIHRTPLRN DVGLVRYNIF QEWVETTKKA RGNANVRYAW LASTKDAVEE MMMHGVLKPP FHERLYGNGI HLTPTNCSNI
301: CARYCDVDEN GIIYLMLCRI IMGNVELIHP GSNQCQPSNE NFDTGVDDLH KPKHYIIWDV NLYTYIYAEF TVTFQATSKV EECLLGKEST CNVSALTNSN
401: SPHSLLQDKT FQPNLGCTNQ SQVPVSRAAP RIPTSPWMPF SMLFAAISTK VSTEDMDLVH THYNDFKKRK INRIDLIKKL RQIIGDKLLV STIMRLQHKL
501: PPMARHEPPE PSSRSLRNNS
101: VQDDFRSKKG ITEAGYQNQH FLLDFIHMVC VILQTGLVKP VAWIDDHGKS FFPELHSHHD QNTYAEVNEV VGENDPGSVF PLNIPAFGAC QAPAGGHHVN
201: RAVQNMLLQG LGKFIDPKNI VGIHRTPLRN DVGLVRYNIF QEWVETTKKA RGNANVRYAW LASTKDAVEE MMMHGVLKPP FHERLYGNGI HLTPTNCSNI
301: CARYCDVDEN GIIYLMLCRI IMGNVELIHP GSNQCQPSNE NFDTGVDDLH KPKHYIIWDV NLYTYIYAEF TVTFQATSKV EECLLGKEST CNVSALTNSN
401: SPHSLLQDKT FQPNLGCTNQ SQVPVSRAAP RIPTSPWMPF SMLFAAISTK VSTEDMDLVH THYNDFKKRK INRIDLIKKL RQIIGDKLLV STIMRLQHKL
501: PPMARHEPPE PSSRSLRNNS
001: MEAKIVKVSD SSYKDGLGKK RKHPGNYTPY DSGRSYAKLQ WVLSPNSSTQ KLEKRRNLDG ENKVIVSENH VEKSLVRYFS YYKKTGVPKR VMFHENGEWI
101: DLPDHILCDI RNDLEAKRAT IEFNWCGRHF LLDFLHMYRL DLETGVKTQL AWIDIAGKCF FPETFDTLER DGCHHIRGED PEQHDQREIK LHIEIDVNSG
201: ELPRLNLNVV TDESGDNMDD FQAVQRSSNG PNDEASEDSC SRELDDAVEK WDKTETDRFS GVKPAEEELD KDAVKQMFAL GAATLGHVES LDVYQFSSEI
301: AKARLSLFQK QADITKKHRG DANIRYAWVP AKKEVLSAVM MHGLGVGGAF IKKSMYGVGV HAANCPYFSA RYCDIDDNGV RHMVLCRVIM GNMEPLRGDN
401: TQYFTGGEEY DNGVDDVESP KHYLIWNMNM NTHIYPEFVV SFKLSIPNAE GNILPTTQSR HESSGLTLEG PKGSPSNEPG RVSNGGSGSE KNSSSSRRPR
501: SPIMPFPLLF KAISSKIARK DMDLIIAGYQ ELREKKVSRK EFYKTLSMIV GDDDLLISTI TGLQRSLG
101: DLPDHILCDI RNDLEAKRAT IEFNWCGRHF LLDFLHMYRL DLETGVKTQL AWIDIAGKCF FPETFDTLER DGCHHIRGED PEQHDQREIK LHIEIDVNSG
201: ELPRLNLNVV TDESGDNMDD FQAVQRSSNG PNDEASEDSC SRELDDAVEK WDKTETDRFS GVKPAEEELD KDAVKQMFAL GAATLGHVES LDVYQFSSEI
301: AKARLSLFQK QADITKKHRG DANIRYAWVP AKKEVLSAVM MHGLGVGGAF IKKSMYGVGV HAANCPYFSA RYCDIDDNGV RHMVLCRVIM GNMEPLRGDN
401: TQYFTGGEEY DNGVDDVESP KHYLIWNMNM NTHIYPEFVV SFKLSIPNAE GNILPTTQSR HESSGLTLEG PKGSPSNEPG RVSNGGSGSE KNSSSSRRPR
501: SPIMPFPLLF KAISSKIARK DMDLIIAGYQ ELREKKVSRK EFYKTLSMIV GDDDLLISTI TGLQRSLG
Arabidopsis Description
SRO1Probable inactive poly [ADP-ribose] polymerase SRO1 [Source:UniProtKB/Swiss-Prot;Acc:O82289]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.