Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G124010.1 | Barley | nucleus | 76.6 | 76.34 |
| TraesCS4A01G321300.1 | Wheat | nucleus | 68.63 | 69.6 |
| TraesCS5B01G557500.2 | Wheat | nucleus | 68.46 | 68.34 |
| TraesCS5D01G551800.3 | Wheat | nucleus | 67.94 | 67.82 |
| EER90487 | Sorghum | nucleus | 44.71 | 45.03 |
| Os03t0854800-03 | Rice | nucleus | 45.06 | 44.52 |
| Zm00001d012821_P003 | Maize | extracellular, vacuole | 44.54 | 39.18 |
| GSMUA_Achr11P... | Banana | nucleus | 33.45 | 37.12 |
| GSMUA_Achr4P19000_001 | Banana | nucleus | 25.65 | 35.32 |
| GSMUA_Achr8P14660_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 33.62 | 35.27 |
| GSMUA_Achr5P14120_001 | Banana | nucleus | 33.8 | 34.45 |
| GSMUA_Achr2P18060_001 | Banana | nucleus | 33.45 | 33.57 |
| HORVU1Hr1G050960.7 | Barley | nucleus | 31.2 | 29.56 |
| Bra023252.1-P | Field mustard | nucleus | 23.05 | 27.59 |
| CDY60257 | Canola | cytosol | 15.42 | 27.22 |
| VIT_02s0012g01930.t01 | Wine grape | nucleus | 27.9 | 25.84 |
| PGSC0003DMT400038368 | Potato | nucleus | 26.34 | 25.81 |
| VIT_02s0012g01920.t01 | Wine grape | cytosol | 23.74 | 25.7 |
| Solyc08g076420.2.1 | Tomato | nucleus | 26.0 | 25.13 |
| Solyc08g005270.2.1 | Tomato | nucleus | 26.0 | 25.0 |
| CDY67026 | Canola | nucleus | 23.22 | 24.36 |
| CDY22597 | Canola | nucleus | 22.88 | 24.26 |
| Bra005336.1-P | Field mustard | cytosol, nucleus, plastid | 21.84 | 24.05 |
| Bra017317.1-P | Field mustard | nucleus | 22.01 | 23.96 |
| CDY32124 | Canola | nucleus | 22.01 | 23.96 |
| CDY31694 | Canola | nucleus | 21.84 | 23.86 |
| PGSC0003DMT400043197 | Potato | nucleus | 24.44 | 23.74 |
| CDX84199 | Canola | cytosol, nucleus, plastid | 20.28 | 23.73 |
| KRH74370 | Soybean | mitochondrion, nucleus, plastid | 23.74 | 23.5 |
| AT1G32230.1 | Thale cress | nucleus | 23.74 | 23.26 |
| KRH39574 | Soybean | mitochondrion, nucleus, plastid | 23.4 | 23.16 |
| CDY43007 | Canola | nucleus | 23.22 | 23.06 |
| Solyc06g066330.2.1 | Tomato | nucleus | 23.57 | 22.9 |
| Bra035511.1-P | Field mustard | cytosol | 22.01 | 22.76 |
| AT2G35510.3 | Thale cress | cytosol | 21.84 | 22.18 |
| CDY41739 | Canola | cytosol | 19.41 | 20.36 |
| HORVU4Hr1G065800.1 | Barley | nucleus, plastid | 16.29 | 18.18 |
| KRH74373 | Soybean | mitochondrion | 14.38 | 17.4 |
| HORVU7Hr1G095570.3 | Barley | nucleus | 18.37 | 11.78 |
Protein Annotations
| EnsemblPlants:HORVU0Hr1G014460.1 | EnsemblPlantsGene:HORVU0Hr1G014460 | Gene3D:3.90.228.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003950 |
| GO:GO:0016740 | InterPro:IPR012317 | InterPro:Poly(ADP-ribose)pol_cat_dom | InterPro:RST | PANTHER:PTHR32263 | PANTHER:PTHR32263:SF4 |
| PFAM:PF12174 | PFscan:PS51059 | SEG:seg | SUPFAM:SSF56399 | UniParc:UPI000B482BA8 | UniProt:A0A287E1K0 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchrUn:+:79477875..79480616
Molecular Weight (calculated)
50934.4 Da
IEP (calculated)
8.596
GRAVY (calculated)
-0.319
Length
577 amino acids
Sequence
(BLAST)
(BLAST)
001: MERKTGMGLD ENVLKATDRK RKHESAVKRT GTDDSAEVSQ HADGSGLLKK SKMTFCAGHI LEWYKNFKTS GLPVRVLCYH QGKWXXXXXX XXXXXXXXXX
101: XXXXXXXXXX XXXXXXLDFM HMVCIDSAVT TNKPIAWIDV HGKRFFPDLC AGLITSKPSX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXDAVLPHV
201: NKANKILEQE QKVHNDAVVE NKAGPAICLN ESAHGTIHAA TCKQKIGQRV DSAVRKLLLE GVGQPFSEED IIGIYRTPLV DQQGRARFNL FQKELEVTKM
301: HRGNANVRYA WLPCSKDAME EMMLRGVLEV TKPMLGPMYG IGTHLAPANC AQTCASYSDI DENGIMRMML CRVIMGNVEV VLPGSKQFQP TNGTFDSGVD
401: DLQKPKHYII WDANVHRHIY AEYAVLIKAP SMTNEYLARE DTASNVSEIR NSGSEESXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
501: XXXXXVPRSD MDIIHGHYEE FKRRKISRPD FVRRLRQIVG DKLLVSTVVR LQPKVLESSN ANPPCRVHXX XXXXXXX
101: XXXXXXXXXX XXXXXXLDFM HMVCIDSAVT TNKPIAWIDV HGKRFFPDLC AGLITSKPSX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXDAVLPHV
201: NKANKILEQE QKVHNDAVVE NKAGPAICLN ESAHGTIHAA TCKQKIGQRV DSAVRKLLLE GVGQPFSEED IIGIYRTPLV DQQGRARFNL FQKELEVTKM
301: HRGNANVRYA WLPCSKDAME EMMLRGVLEV TKPMLGPMYG IGTHLAPANC AQTCASYSDI DENGIMRMML CRVIMGNVEV VLPGSKQFQP TNGTFDSGVD
401: DLQKPKHYII WDANVHRHIY AEYAVLIKAP SMTNEYLARE DTASNVSEIR NSGSEESXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
501: XXXXXVPRSD MDIIHGHYEE FKRRKISRPD FVRRLRQIVG DKLLVSTVVR LQPKVLESSN ANPPCRVHXX XXXXXXX
001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNQGARGS GSANSVGSST
501: TRPKSPWMPF PTLFAAISHK VAENDMLLIN ADYQQLRDKK MTRAEFVRKL RVIVGDDLLR STITTLQNQP KSKEIPGSIR DHEEGAGGL
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNQGARGS GSANSVGSST
501: TRPKSPWMPF PTLFAAISHK VAENDMLLIN ADYQQLRDKK MTRAEFVRKL RVIVGDDLLR STITTLQNQP KSKEIPGSIR DHEEGAGGL
Arabidopsis Description
RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.