Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU0Hr1G014460.1 | |
| HORVU1Hr1G050960.7 | |
| HORVU5Hr1G124010.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G04060.1 | HORVU0Hr1G014460.1 | AT1G32230.1 | 19548978 |
| AT3G04060.1 | HORVU1Hr1G050960.7 | AT1G32230.1 | 19548978 |
| AT3G04060.1 | HORVU5Hr1G124010.1 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G154200.1 | Wheat | nucleus | 85.88 | 85.39 |
| TraesCS7A01G152500.1 | Wheat | nucleus | 85.03 | 84.55 |
| TraesCS7B01G056300.1 | Wheat | nucleus | 83.05 | 82.35 |
| HORVU4Hr1G089450.1 | Barley | cytosol, mitochondrion, nucleus, peroxisome | 66.38 | 67.14 |
| HORVU7Hr1G039700.1 | Barley | nucleus | 64.97 | 66.47 |
| HORVU3Hr1G014100.1 | Barley | cytosol, nucleus | 67.8 | 63.66 |
| HORVU7Hr1G122680.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 62.43 | 59.73 |
| HORVU3Hr1G014090.1 | Barley | nucleus | 35.59 | 58.06 |
| EES02626 | Sorghum | cytosol | 22.88 | 56.64 |
| CDY29982 | Canola | cytosol | 27.4 | 56.4 |
| GSMUA_Achr10P... | Banana | cytosol | 31.92 | 49.56 |
| GSMUA_Achr5P07600_001 | Banana | cytosol | 33.62 | 48.37 |
| HORVU2Hr1G017380.1 | Barley | cytosol, nucleus, plastid | 29.66 | 44.68 |
| Os01t0104500-01 | Rice | cytosol, mitochondrion, nucleus | 39.55 | 43.75 |
| HORVU2Hr1G017360.1 | Barley | nucleus | 18.36 | 42.76 |
| GSMUA_Achr7P18330_001 | Banana | nucleus | 36.72 | 42.21 |
| Os01t0393100-01 | Rice | nucleus | 38.42 | 41.46 |
| GSMUA_Achr9P16920_001 | Banana | cytosol | 35.59 | 41.18 |
| GSMUA_Achr3P09520_001 | Banana | cytosol | 35.59 | 39.62 |
| GSMUA_Achr6P08600_001 | Banana | nucleus | 38.7 | 39.48 |
| GSMUA_Achr3P18020_001 | Banana | nucleus | 32.49 | 39.25 |
| HORVU4Hr1G012030.1 | Barley | cytosol, mitochondrion, nucleus | 32.77 | 38.8 |
| GSMUA_Achr6P32290_001 | Banana | nucleus | 37.85 | 38.73 |
| HORVU4Hr1G051360.3 | Barley | nucleus | 37.85 | 38.73 |
| CDY53250 | Canola | nucleus | 34.18 | 36.01 |
| Bra023669.1-P | Field mustard | nucleus | 34.18 | 36.01 |
| CDY02636 | Canola | nucleus | 33.9 | 35.61 |
| CDX70804 | Canola | nucleus | 33.62 | 35.31 |
| AT5G18270.1 | Thale cress | nucleus | 33.33 | 35.22 |
| Bra006449.1-P | Field mustard | nucleus | 33.33 | 35.12 |
| Bra002148.1-P | Field mustard | nucleus | 33.33 | 35.12 |
| CDY51238 | Canola | nucleus | 33.33 | 35.01 |
| HORVU5Hr1G074810.1 | Barley | nucleus | 35.88 | 34.99 |
| Zm00001d040189_P002 | Maize | mitochondrion, nucleus, peroxisome | 38.42 | 34.78 |
| AT3G04060.1 | Thale cress | nucleus | 32.77 | 34.32 |
| Zm00001d008403_P001 | Maize | plastid | 31.07 | 34.16 |
| OQU89451 | Sorghum | cytosol | 35.31 | 33.6 |
| CDY50879 | Canola | cytoskeleton, cytosol, nucleus | 32.49 | 33.53 |
| VIT_08s0007g07640.t01 | Wine grape | nucleus | 38.14 | 33.5 |
| Bra031950.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 32.49 | 33.43 |
| KRG94783 | Soybean | nucleus | 38.14 | 33.33 |
| EES02651 | Sorghum | nucleus | 37.57 | 33.25 |
| Bra040153.1-P | Field mustard | nucleus | 31.92 | 32.94 |
| HORVU7Hr1G106480.1 | Barley | nucleus | 28.53 | 32.9 |
| CDY42901 | Canola | nucleus | 31.92 | 32.85 |
| EES17917 | Sorghum | cytosol | 37.29 | 32.84 |
| KRH06738 | Soybean | nucleus | 37.57 | 32.68 |
| KXG28945 | Sorghum | cytoskeleton, nucleus, peroxisome | 34.18 | 32.61 |
| HORVU2Hr1G089210.4 | Barley | cytosol, mitochondrion, nucleus | 25.71 | 32.27 |
| HORVU2Hr1G103930.1 | Barley | mitochondrion | 26.27 | 31.53 |
| KRH08479 | Soybean | nucleus | 35.59 | 30.73 |
| HORVU2Hr1G017400.3 | Barley | nucleus | 33.05 | 30.55 |
| KRH70130 | Soybean | nucleus | 35.03 | 30.24 |
| HORVU0Hr1G017490.7 | Barley | nucleus | 25.71 | 29.26 |
| HORVU2Hr1G017350.1 | Barley | nucleus | 32.49 | 28.97 |
| HORVU2Hr1G080460.8 | Barley | plastid | 33.33 | 28.85 |
| HORVU7Hr1G082420.2 | Barley | nucleus | 31.64 | 28.57 |
| HORVU7Hr1G072670.3 | Barley | cytosol, plastid | 27.4 | 28.45 |
| HORVU7Hr1G106660.9 | Barley | nucleus, plastid | 28.25 | 27.55 |
| HORVU2Hr1G017370.1 | Barley | cytosol, nucleus, plastid | 32.49 | 27.06 |
| GSMUA_Achr8P21470_001 | Banana | nucleus | 39.27 | 26.94 |
| HORVU5Hr1G045640.7 | Barley | mitochondrion | 33.33 | 25.93 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:HORVU7Hr1G031260 |
| EnsemblPlants:HORVU7Hr1G031260.1 | InterPro:IPR003441 | InterPro:IPR036093 | UniProt:M0XA33 | InterPro:NAC-dom | InterPro:NAC_dom_sf |
| PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31744 | PANTHER:PTHR31744:SF23 | SUPFAM:SSF101941 | UniParc:UPI000294A9C6 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr7H:+:63396714..63397883
Molecular Weight (calculated)
38972.8 Da
IEP (calculated)
7.826
GRAVY (calculated)
-0.406
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MADHIQVQRQ QLKFPTGFRF HPTDVEIITS YLVPKVLNKA FNAIAVGEVD LNKCEPWELP EKANMGEKEW YFFSQKDRKY PTGIRTNRAT AAGYWKATGK
101: DKEVFHQATT SLIGMKKTLV FYMGRAPRGE KTNWVMHEYR LESGKQGTPG LPTDITTAAA INASSKEEYV VCRIFHKSTG LKKVVMSSYA IPMPMSMGAA
201: QQHGFLESGA LPSLMGYGTS SSSPAPPSLL PAASSYQLHN VGVSSSMMGS AMLPMMNDHY FGNHHYQKMP TPPQPLMSSY HQDHHQQQQQ LIQMPMQMQM
301: GADEGLMVGV EPGSGPSSIL SQEDTVTGLS SNGVGTTADE ISSMNIGMDG MLKY
101: DKEVFHQATT SLIGMKKTLV FYMGRAPRGE KTNWVMHEYR LESGKQGTPG LPTDITTAAA INASSKEEYV VCRIFHKSTG LKKVVMSSYA IPMPMSMGAA
201: QQHGFLESGA LPSLMGYGTS SSSPAPPSLL PAASSYQLHN VGVSSSMMGS AMLPMMNDHY FGNHHYQKMP TPPQPLMSSY HQDHHQQQQQ LIQMPMQMQM
301: GADEGLMVGV EPGSGPSSIL SQEDTVTGLS SNGVGTTADE ISSMNIGMDG MLKY
001: METFGVFHKE DDEQMDLPPG FRFHPTDEEL ITHYLHKKVL DLGFSAKAIG EVDLNKAEPW ELPYKAKIGE KEWYFFCVRD RKYPTGLRTN RATQAGYWKA
101: TGKDKEIFRG KSLVGMKKTL VFYRGRAPKG QKTNWVMHEY RLDGKLSAHN LPKTAKNEWV ICRVFHKTAG GKKIPISTLI RIGSYGTGSS LPPLTDSSPY
201: NDKTKTEPVY VPCFSNQAET RGTILNCFSN PSLSSIQPDF LQMIPLYQPQ SLNISESSNP VLTQEQSVLQ AMMENNRRQN FKTLSISQET GVSNTDNSSV
301: FEFGRKRFDH QEVPSPSSGP VDLEPFWNY
101: TGKDKEIFRG KSLVGMKKTL VFYRGRAPKG QKTNWVMHEY RLDGKLSAHN LPKTAKNEWV ICRVFHKTAG GKKIPISTLI RIGSYGTGSS LPPLTDSSPY
201: NDKTKTEPVY VPCFSNQAET RGTILNCFSN PSLSSIQPDF LQMIPLYQPQ SLNISESSNP VLTQEQSVLQ AMMENNRRQN FKTLSISQET GVSNTDNSSV
301: FEFGRKRFDH QEVPSPSSGP VDLEPFWNY
Arabidopsis Description
NAC079NAC4 [Source:UniProtKB/TrEMBL;Acc:A0A178UL34]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.