Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G210300.4 | Wheat | peroxisome | 91.13 | 94.23 |
| TraesCS1A01G195400.4 | Wheat | cytosol | 91.46 | 94.09 |
| TraesCS1D01G199200.1 | Wheat | cytosol, nucleus, plastid | 90.97 | 93.58 |
| Os10t0577800-01 | Rice | nucleus | 64.2 | 66.16 |
| KXG38822 | Sorghum | nucleus | 62.07 | 63.53 |
| Zm00001d030110_P001 | Maize | mitochondrion, nucleus | 62.07 | 63.42 |
| Zm00001d014423_P002 | Maize | nucleus | 62.4 | 61.99 |
| GSMUA_Achr11P... | Banana | nucleus | 36.78 | 43.08 |
| GSMUA_Achr2P18060_001 | Banana | nucleus | 40.56 | 42.96 |
| GSMUA_Achr5P14120_001 | Banana | nucleus | 39.9 | 42.93 |
| GSMUA_Achr8P14660_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 36.78 | 40.73 |
| HORVU5Hr1G124010.1 | Barley | nucleus | 35.8 | 37.65 |
| GSMUA_Achr4P19000_001 | Banana | nucleus | 25.78 | 37.47 |
| VIT_02s0012g01920.t01 | Wine grape | cytosol | 29.72 | 33.96 |
| VIT_02s0012g01930.t01 | Wine grape | nucleus | 33.5 | 32.74 |
| KRH39574 | Soybean | mitochondrion, nucleus, plastid | 30.54 | 31.9 |
| KRH74370 | Soybean | mitochondrion, nucleus, plastid | 30.38 | 31.73 |
| Solyc08g005270.2.1 | Tomato | nucleus | 31.2 | 31.67 |
| HORVU0Hr1G014460.1 | Barley | nucleus | 29.56 | 31.2 |
| CDY60257 | Canola | cytosol | 16.75 | 31.19 |
| PGSC0003DMT400038368 | Potato | nucleus | 29.23 | 30.22 |
| Solyc08g076420.2.1 | Tomato | nucleus | 29.23 | 29.82 |
| PGSC0003DMT400043197 | Potato | nucleus | 28.9 | 29.63 |
| CDY22597 | Canola | nucleus | 25.78 | 28.86 |
| Bra023252.1-P | Field mustard | nucleus | 22.33 | 28.22 |
| AT2G35510.3 | Thale cress | cytosol | 26.27 | 28.17 |
| CDY32124 | Canola | nucleus | 24.47 | 28.11 |
| AT1G32230.1 | Thale cress | nucleus | 27.09 | 28.01 |
| Solyc06g066330.2.1 | Tomato | nucleus | 27.26 | 27.95 |
| Bra017317.1-P | Field mustard | nucleus | 24.3 | 27.92 |
| CDY67026 | Canola | nucleus | 25.12 | 27.82 |
| CDY43007 | Canola | nucleus | 26.44 | 27.71 |
| Bra005336.1-P | Field mustard | cytosol, nucleus, plastid | 23.65 | 27.48 |
| CDX84199 | Canola | cytosol, nucleus, plastid | 22.17 | 27.38 |
| CDY31694 | Canola | nucleus | 22.99 | 26.52 |
| Bra035511.1-P | Field mustard | cytosol | 24.14 | 26.34 |
| CDY41739 | Canola | cytosol | 21.84 | 24.18 |
| KRH74373 | Soybean | mitochondrion | 18.06 | 23.06 |
| HORVU4Hr1G065800.1 | Barley | nucleus, plastid | 16.91 | 19.92 |
| HORVU7Hr1G095570.3 | Barley | nucleus | 22.17 | 15.0 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G050960.7 | EnsemblPlantsGene:HORVU1Hr1G050960 | Gene3D:3.90.228.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003950 |
| GO:GO:0016740 | InterPro:IPR012317 | InterPro:Poly(ADP-ribose)pol_cat_dom | InterPro:RST | PANTHER:PTHR32263 | PANTHER:PTHR32263:SF10 |
| PFAM:PF12174 | PFscan:PS51059 | SEG:seg | SUPFAM:SSF56399 | UniParc:UPI000B488F07 | UniProt:A0A287FIY4 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:-:378192857..378197197
Molecular Weight (calculated)
68128.0 Da
IEP (calculated)
7.202
GRAVY (calculated)
-0.475
Length
609 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAMNEKVLA KCEQNIVSLK RKRDSPAAYH ADACHTSQSH QHPTGNSDIR LYVGEDRKAN IACHLSRQIL QSYQNYMTSA SPKRILLRQS GNWKEFPEKI
101: VKLAQVNFRT KKSITEVGYQ NQLFLLDFVH MTFIDSKSGL QRPIAWIDDN GRRYFPEVLI EDQIAYRRKD FGNGDHVYVR AEPNGTPEIN DQYGASESSA
201: ESSNFESSTE EVSSAKRVRA EKNIIRKINC DNGETVGENE PHTSLPAVFS CQPQQDKLGG QSRAQGTTSV VQKMLLQGMG TAIGSKDIIG IHRTPFLNNY
301: REDRYDLFQK QAEITKSQHG NANVRYAWLP CSKAAVDEMM LNGTLQVKKP TRCPPYGTGV LLAPANCSIN CVNYSDVDEN GIIYMMLCRV VMGNVEIVHH
401: GSKQHQPSNE YFDSGVDDLK NPQHYIVWDM NLNSHIYSEF VVTIKLPSKA KDSIFTQEDC HDSSDASLVL SPSSADSVSQ DMNLEASPAL GGQYEAPMLG
501: DSMAKAPSTP WMPFSMLFAA ISTKLPREKM DMINNCYEEF KAKKISRIDL VKRLRLIVGD RMLVSTIIRL QDKVLASDGE AGSSKCASSQ GTMSVTMVDW
601: RKELVDLLS
101: VKLAQVNFRT KKSITEVGYQ NQLFLLDFVH MTFIDSKSGL QRPIAWIDDN GRRYFPEVLI EDQIAYRRKD FGNGDHVYVR AEPNGTPEIN DQYGASESSA
201: ESSNFESSTE EVSSAKRVRA EKNIIRKINC DNGETVGENE PHTSLPAVFS CQPQQDKLGG QSRAQGTTSV VQKMLLQGMG TAIGSKDIIG IHRTPFLNNY
301: REDRYDLFQK QAEITKSQHG NANVRYAWLP CSKAAVDEMM LNGTLQVKKP TRCPPYGTGV LLAPANCSIN CVNYSDVDEN GIIYMMLCRV VMGNVEIVHH
401: GSKQHQPSNE YFDSGVDDLK NPQHYIVWDM NLNSHIYSEF VVTIKLPSKA KDSIFTQEDC HDSSDASLVL SPSSADSVSQ DMNLEASPAL GGQYEAPMLG
501: DSMAKAPSTP WMPFSMLFAA ISTKLPREKM DMINNCYEEF KAKKISRIDL VKRLRLIVGD RMLVSTIIRL QDKVLASDGE AGSSKCASSQ GTMSVTMVDW
601: RKELVDLLS
001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNQGARGS GSANSVGSST
501: TRPKSPWMPF PTLFAAISHK VAENDMLLIN ADYQQLRDKK MTRAEFVRKL RVIVGDDLLR STITTLQNQP KSKEIPGSIR DHEEGAGGL
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNQGARGS GSANSVGSST
501: TRPKSPWMPF PTLFAAISHK VAENDMLLIN ADYQQLRDKK MTRAEFVRKL RVIVGDDLLR STITTLQNQP KSKEIPGSIR DHEEGAGGL
Arabidopsis Description
RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.