Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU0Hr1G014460.1 | |
| HORVU1Hr1G050960.7 | |
| HORVU5Hr1G124010.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G16770.1 | HORVU0Hr1G014460.1 | AT1G32230.1 | 19548978 |
| AT2G16770.1 | HORVU1Hr1G050960.7 | AT1G32230.1 | 19548978 |
| AT2G16770.1 | HORVU5Hr1G124010.1 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G116780.1 | Barley | nucleus | 76.03 | 42.99 |
| TraesCS7A01G530300.1 | Wheat | nucleus | 79.34 | 37.94 |
| HORVU7Hr1G117020.4 | Barley | nucleus | 80.99 | 37.55 |
| TraesCS7D01G518100.1 | Wheat | nucleus | 76.86 | 37.2 |
| TraesCS7B01G447900.1 | Wheat | nucleus | 72.73 | 34.51 |
| Zm00001d036400_P001 | Maize | nucleus | 48.76 | 32.6 |
| HORVU7Hr1G117010.1 | Barley | nucleus | 50.41 | 31.77 |
| HORVU7Hr1G117170.1 | Barley | nucleus | 47.93 | 28.86 |
| EER90398 | Sorghum | nucleus | 61.16 | 27.11 |
| Zm00001d014795_P001 | Maize | nucleus | 61.16 | 26.81 |
| Os06t0716800-01 | Rice | nucleus | 59.5 | 26.47 |
| HORVU5Hr1G005780.2 | Barley | nucleus | 58.68 | 26.39 |
| CDY26786 | Canola | nucleus | 45.45 | 23.01 |
| AT4G35040.2 | Thale cress | nucleus | 48.76 | 22.61 |
| Bra013048.1-P | Field mustard | nucleus | 44.63 | 22.59 |
| Bra037290.1-P | Field mustard | nucleus | 44.63 | 22.59 |
| CDY02237 | Canola | nucleus | 44.63 | 22.59 |
| AT2G16770.1 | Thale cress | nucleus | 46.28 | 22.49 |
| CDY47478 | Canola | nucleus | 44.63 | 22.41 |
| CDX89748 | Canola | nucleus | 45.45 | 22.18 |
| Bra034668.1-P | Field mustard | nucleus | 46.28 | 21.96 |
| CDY17503 | Canola | nucleus | 46.28 | 21.96 |
| GSMUA_Achr1P14830_001 | Banana | nucleus | 49.59 | 21.82 |
| GSMUA_Achr3P00670_001 | Banana | nucleus | 49.59 | 21.82 |
| VIT_03s0038g02420.t01 | Wine grape | nucleus | 48.76 | 21.77 |
| HORVU1Hr1G067680.1 | Barley | nucleus | 39.67 | 21.33 |
| HORVU0Hr1G000950.1 | Barley | nucleus | 39.67 | 21.33 |
| KRH29295 | Soybean | nucleus | 47.11 | 21.11 |
| Bra011580.1-P | Field mustard | nucleus | 39.67 | 20.78 |
| KRH24316 | Soybean | nucleus | 46.28 | 20.66 |
| CDX76308 | Canola | nucleus | 46.28 | 20.51 |
| CDY52654 | Canola | nucleus | 39.67 | 20.17 |
| CDX69107 | Canola | nucleus | 42.98 | 19.19 |
| PGSC0003DMT400015830 | Potato | nucleus | 42.15 | 18.75 |
| Solyc01g111580.2.1 | Tomato | nucleus | 41.32 | 18.52 |
| GSMUA_Achr7P03840_001 | Banana | golgi, mitochondrion, nucleus, plastid | 50.41 | 18.37 |
| HORVU3Hr1G078550.1 | Barley | nucleus | 32.23 | 18.31 |
| PGSC0003DMT400031184 | Potato | nucleus | 37.19 | 17.37 |
| Solyc10g055550.1.1 | Tomato | plasma membrane | 37.19 | 14.8 |
| HORVU1Hr1G072090.1 | Barley | plastid | 12.4 | 8.82 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G002780.1 | EnsemblPlantsGene:HORVU6Hr1G002780 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR004827 | InterPro:bZIP |
| PANTHER:PTHR23334 | PANTHER:PTHR23334:SF25 | PFAM:PF07716 | SEG:seg | UniParc:UPI000B47EF41 | UniProt:A0A287T5H0 |
| MapMan:15.5.4.3 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:+:6968267..6968987
Molecular Weight (calculated)
13379.6 Da
IEP (calculated)
6.421
GRAVY (calculated)
-0.546
Length
121 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGDINFSN PETYLCEAIG NDPPSSCSMG SYFDDILDSD ADHLACTHTY TCNRHVHDLV HHTHTCVHVH TKILSASNDV AGSPPYAKKQ RPSGNCAAVR
101: KYREKKTTHT VLLEEEVAHL M
101: KYREKKTTHT VLLEEEVAHL M
001: MEDGELDFSN QEVFSSSEMG ELPPSNCSMD SFFDGLLMDT NAACTHTHTC NPTGPENTHT HTCFHVHTKI LPDESDEKVS TDDTAESCGK KGEKRPLGNR
101: EAVRKYREKK KAKAASLEDE VARLRAVNQQ LVKRLQNQAT LEAEVSRLKC LLVDLRGRID GEIGSFPYQK PMAANIPSFS HMMNPCNVQC DDEVYCPQNV
201: FGVNSQEGAS INDQGLSGCD FDQLQCMANQ NLNGNGNGSF SNVNTSVSNK RKGGHRASRA V
101: EAVRKYREKK KAKAASLEDE VARLRAVNQQ LVKRLQNQAT LEAEVSRLKC LLVDLRGRID GEIGSFPYQK PMAANIPSFS HMMNPCNVQC DDEVYCPQNV
201: FGVNSQEGAS INDQGLSGCD FDQLQCMANQ NLNGNGNGSF SNVNTSVSNK RKGGHRASRA V
Arabidopsis Description
BZIP19Basic leucine zipper 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8VY76]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.