Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU0Hr1G014460.1 | |
| HORVU1Hr1G050960.7 | |
| HORVU5Hr1G124010.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G16770.1 | HORVU0Hr1G014460.1 | AT1G32230.1 | 19548978 |
| AT2G16770.1 | HORVU1Hr1G050960.7 | AT1G32230.1 | 19548978 |
| AT2G16770.1 | HORVU5Hr1G124010.1 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G518100.1 | Wheat | nucleus | 90.42 | 94.4 |
| TraesCS7A01G530300.1 | Wheat | nucleus | 84.29 | 86.96 |
| TraesCS7B01G447900.1 | Wheat | nucleus | 80.84 | 82.75 |
| HORVU5Hr1G116780.1 | Barley | nucleus | 67.05 | 81.78 |
| HORVU6Hr1G002780.1 | Barley | nucleus | 37.55 | 80.99 |
| HORVU1Hr1G072090.1 | Barley | plastid | 42.15 | 64.71 |
| HORVU5Hr1G005780.2 | Barley | nucleus | 61.69 | 59.85 |
| EER90398 | Sorghum | nucleus | 61.3 | 58.61 |
| Os06t0716800-01 | Rice | nucleus | 60.54 | 58.09 |
| Zm00001d014795_P001 | Maize | nucleus | 60.15 | 56.88 |
| HORVU7Hr1G117010.1 | Barley | nucleus | 41.76 | 56.77 |
| HORVU7Hr1G117170.1 | Barley | nucleus | 41.76 | 54.23 |
| Zm00001d036400_P001 | Maize | nucleus | 36.02 | 51.93 |
| GSMUA_Achr3P00670_001 | Banana | nucleus | 50.96 | 48.36 |
| GSMUA_Achr1P14830_001 | Banana | nucleus | 50.57 | 48.0 |
| Bra037290.1-P | Field mustard | nucleus | 43.68 | 47.7 |
| CDY47478 | Canola | nucleus | 43.68 | 47.3 |
| CDY26786 | Canola | nucleus | 43.3 | 47.28 |
| CDY02237 | Canola | nucleus | 41.76 | 45.61 |
| AT2G16770.1 | Thale cress | nucleus | 43.3 | 45.38 |
| Bra013048.1-P | Field mustard | nucleus | 41.38 | 45.19 |
| CDX89748 | Canola | nucleus | 42.53 | 44.76 |
| VIT_03s0038g02420.t01 | Wine grape | nucleus | 45.98 | 44.28 |
| AT4G35040.2 | Thale cress | nucleus | 43.3 | 43.3 |
| CDY17503 | Canola | nucleus | 42.15 | 43.14 |
| Bra034668.1-P | Field mustard | nucleus | 42.15 | 43.14 |
| PGSC0003DMT400015830 | Potato | nucleus | 44.83 | 43.01 |
| Solyc01g111580.2.1 | Tomato | nucleus | 44.44 | 42.96 |
| HORVU0Hr1G000950.1 | Barley | nucleus | 36.02 | 41.78 |
| Bra011580.1-P | Field mustard | nucleus | 36.78 | 41.56 |
| HORVU1Hr1G067680.1 | Barley | nucleus | 35.25 | 40.89 |
| CDY52654 | Canola | nucleus | 36.78 | 40.34 |
| CDX76308 | Canola | nucleus | 42.15 | 40.29 |
| KRH29295 | Soybean | nucleus | 41.38 | 40.0 |
| GSMUA_Achr7P03840_001 | Banana | golgi, mitochondrion, nucleus, plastid | 49.81 | 39.16 |
| KRH24316 | Soybean | nucleus | 40.61 | 39.11 |
| PGSC0003DMT400031184 | Potato | nucleus | 38.31 | 38.61 |
| HORVU3Hr1G078550.1 | Barley | nucleus | 31.03 | 38.03 |
| CDX69107 | Canola | nucleus | 39.46 | 38.01 |
| Solyc10g055550.1.1 | Tomato | plasma membrane | 38.7 | 33.22 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G117020.4 | EnsemblPlantsGene:HORVU7Hr1G117020 | Gene3D:1.20.5.170 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR004827 |
| InterPro:bZIP | PANTHER:PTHR23334 | PANTHER:PTHR23334:SF25 | PFAM:PF07716 | SEG:seg | SMART:SM00338 |
| SUPFAM:SSF57959 | UniParc:UPI000B479E6B | UniProt:A0A287XXQ7 | MapMan:15.5.4.1 | MapMan:15.5.4.3 | : |
Description
No Description!
Coordinates
chrchr7H:-:644483588..644484500
Molecular Weight (calculated)
28358.3 Da
IEP (calculated)
5.493
GRAVY (calculated)
-0.458
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDGDIDFSN PETYLCEAMG NDPPASCSMG SYFDDILNSD ADHLACTHTH TCNPPVHDLA HHTHTCVHVH TKILSASDDA AETSESLPDA KKQRPSGNRA
101: AVRKYREKKK AHTALLEEEV AHLKAVNQQL VKKLQSHSAL EAEVARLRCL LVDIRGRIEG EIGTFPYQRS VKSNEFVDQG SFLGGAQVMN SCDFRCNDQL
201: YCNPGMQQAR TMDDDGVMSA GQVLGQGAGD TMGCVKPGSL NPPGCRGDFD LATWCLGCFG L
101: AVRKYREKKK AHTALLEEEV AHLKAVNQQL VKKLQSHSAL EAEVARLRCL LVDIRGRIEG EIGTFPYQRS VKSNEFVDQG SFLGGAQVMN SCDFRCNDQL
201: YCNPGMQQAR TMDDDGVMSA GQVLGQGAGD TMGCVKPGSL NPPGCRGDFD LATWCLGCFG L
001: MDDGELEFSN SNMGGELPSC SMDSFFDELL RDSHACTHTH TCNPPGPENT HTHTCLHVHT KILPDKVSTD DTSESSGKKR PLGNREAVRK YREKKKAKAA
101: SLEDEVMRLK AVNNQLLKRL QGQAALEAEV TRLKCLLVDI RGRIDGEIGA FPYQKPAVTN VPYSYMMHPC NMQCDVDNLY CLQNGNNGEG ASMNEQGLNG
201: CEFDQLECLA NQNLAGKEIP VCSNGIGTFT VNGSGVNKRK GEPRAAKAV
101: SLEDEVMRLK AVNNQLLKRL QGQAALEAEV TRLKCLLVDI RGRIDGEIGA FPYQKPAVTN VPYSYMMHPC NMQCDVDNLY CLQNGNNGEG ASMNEQGLNG
201: CEFDQLECLA NQNLAGKEIP VCSNGIGTFT VNGSGVNKRK GEPRAAKAV
Arabidopsis Description
BZIP23Basic leucine zipper 23 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTS2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.