Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400038368 | |
| PGSC0003DMT400043197 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G16770.1 | PGSC0003DMT400038368 | AT1G32230.1 | 19548978 |
| AT2G16770.1 | PGSC0003DMT400043197 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g111580.2.1 | Tomato | nucleus | 96.32 | 97.04 |
| VIT_03s0038g02420.t01 | Wine grape | nucleus | 67.28 | 67.53 |
| PGSC0003DMT400031184 | Potato | nucleus | 61.03 | 64.09 |
| Bra037290.1-P | Field mustard | nucleus | 56.25 | 64.02 |
| CDY47478 | Canola | nucleus | 56.25 | 63.49 |
| CDY26786 | Canola | nucleus | 55.51 | 63.18 |
| AT2G16770.1 | Thale cress | nucleus | 57.72 | 63.05 |
| Bra013048.1-P | Field mustard | nucleus | 55.15 | 62.76 |
| KRH24316 | Soybean | nucleus | 62.13 | 62.36 |
| CDY02237 | Canola | nucleus | 54.41 | 61.92 |
| CDX89748 | Canola | nucleus | 56.25 | 61.69 |
| KRH29295 | Soybean | nucleus | 61.03 | 61.48 |
| AT4G35040.2 | Thale cress | nucleus | 56.99 | 59.39 |
| CDY17503 | Canola | nucleus | 53.68 | 57.25 |
| Bra034668.1-P | Field mustard | nucleus | 53.68 | 57.25 |
| Bra011580.1-P | Field mustard | nucleus | 48.53 | 57.14 |
| CDY52654 | Canola | nucleus | 49.26 | 56.3 |
| CDX69107 | Canola | nucleus | 52.57 | 52.77 |
| CDX76308 | Canola | nucleus | 52.94 | 52.75 |
| TraesCS7A01G530400.1 | Wheat | nucleus | 34.56 | 50.0 |
| TraesCS7D01G518200.1 | Wheat | nucleus | 32.72 | 50.0 |
| GSMUA_Achr3P00670_001 | Banana | nucleus | 50.37 | 49.82 |
| GSMUA_Achr1P14830_001 | Banana | nucleus | 49.63 | 49.09 |
| TraesCS7B01G448000.1 | Wheat | nucleus | 31.25 | 48.3 |
| TraesCS7A01G531800.1 | Wheat | nucleus | 34.56 | 48.21 |
| TraesCS5B01G017700.1 | Wheat | nucleus | 46.69 | 47.92 |
| TraesCS5D01G025800.1 | Wheat | nucleus | 46.69 | 47.74 |
| TraesCS7D01G519200.1 | Wheat | nucleus | 34.19 | 47.45 |
| Os06t0716800-01 | Rice | nucleus | 47.43 | 47.43 |
| HORVU5Hr1G005780.2 | Barley | nucleus | 46.32 | 46.84 |
| EER90398 | Sorghum | nucleus | 46.32 | 46.15 |
| TraesCS7B01G449200.1 | Wheat | nucleus | 34.56 | 46.08 |
| Zm00001d014795_P001 | Maize | nucleus | 45.96 | 45.29 |
| TraesCS7D01G518100.1 | Wheat | nucleus | 41.54 | 45.2 |
| TraesCS7B01G447900.1 | Wheat | nucleus | 42.28 | 45.1 |
| TraesCS7A01G530300.1 | Wheat | nucleus | 41.91 | 45.06 |
| HORVU7Hr1G117020.4 | Barley | nucleus | 43.01 | 44.83 |
| HORVU7Hr1G117010.1 | Barley | nucleus | 31.62 | 44.79 |
| HORVU5Hr1G116780.1 | Barley | nucleus | 34.93 | 44.39 |
| HORVU7Hr1G117170.1 | Barley | nucleus | 32.72 | 44.28 |
| TraesCS7D01G413100.1 | Wheat | nucleus | 30.88 | 43.52 |
| TraesCS5A01G020700.1 | Wheat | nucleus | 45.96 | 42.66 |
| HORVU6Hr1G002780.1 | Barley | nucleus | 18.75 | 42.15 |
| Zm00001d036400_P001 | Maize | nucleus | 26.47 | 39.78 |
| GSMUA_Achr7P03840_001 | Banana | golgi, mitochondrion, nucleus, plastid | 48.53 | 39.76 |
| TraesCS7A01G420400.1 | Wheat | nucleus | 36.4 | 32.35 |
| HORVU1Hr1G072090.1 | Barley | plastid | 20.22 | 32.35 |
| TraesCS7B01G321300.1 | Wheat | nucleus | 35.29 | 29.63 |
Protein Annotations
| Gene3D:1.20.5.170 | EntrezGene:102599645 | MapMan:15.5.4.1 | MapMan:15.5.4.3 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003700 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR004827 | UniProt:M1A6N8 | PFAM:PF07716 | EnsemblPlantsGene:PGSC0003DMG401006188 | PGSC:PGSC0003DMG401006188 |
| EnsemblPlants:PGSC0003DMT400015830 | PFscan:PS50217 | PANTHER:PTHR23334 | PANTHER:PTHR23334:SF25 | SMART:SM00338 | SUPFAM:SSF57959 |
| UniParc:UPI0002949F72 | RefSeq:XP_006359698.1 | InterPro:bZIP | SEG:seg | : | : |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG401006188]
Coordinates
chr1:+:87564439..87569506
Molecular Weight (calculated)
29681.5 Da
IEP (calculated)
6.413
GRAVY (calculated)
-0.737
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MADGELDISN QEMLSSSNFG EFSSSMDSFF NEILKDAHAC THAHTCNPPG PDNSHTHTCY HVHTKIVPTT DDDKNPSDDT AESADNKGKK RPVGNKEAVR
101: KYREKKKARA ASLEDEVIRL RAINQQLLKR LQGQAVLEAE VARLKCLLVD IRGRIEGEIG SFPYQKPMKS GNTYQHIVNP NFPGAYVVNS CNLQCDDQVY
201: CLHPGAEGKS SDGTVLNGQG FNNCEFETLQ CLGNQTTGLE EVPGCVVGNS TPTDNTSGQS KRKGGTRTTT TS
101: KYREKKKARA ASLEDEVIRL RAINQQLLKR LQGQAVLEAE VARLKCLLVD IRGRIEGEIG SFPYQKPMKS GNTYQHIVNP NFPGAYVVNS CNLQCDDQVY
201: CLHPGAEGKS SDGTVLNGQG FNNCEFETLQ CLGNQTTGLE EVPGCVVGNS TPTDNTSGQS KRKGGTRTTT TS
001: MDDGELEFSN SNMGGELPSC SMDSFFDELL RDSHACTHTH TCNPPGPENT HTHTCLHVHT KILPDKVSTD DTSESSGKKR PLGNREAVRK YREKKKAKAA
101: SLEDEVMRLK AVNNQLLKRL QGQAALEAEV TRLKCLLVDI RGRIDGEIGA FPYQKPAVTN VPYSYMMHPC NMQCDVDNLY CLQNGNNGEG ASMNEQGLNG
201: CEFDQLECLA NQNLAGKEIP VCSNGIGTFT VNGSGVNKRK GEPRAAKAV
101: SLEDEVMRLK AVNNQLLKRL QGQAALEAEV TRLKCLLVDI RGRIDGEIGA FPYQKPAVTN VPYSYMMHPC NMQCDVDNLY CLQNGNNGEG ASMNEQGLNG
201: CEFDQLECLA NQNLAGKEIP VCSNGIGTFT VNGSGVNKRK GEPRAAKAV
Arabidopsis Description
BZIP23Basic leucine zipper 23 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTS2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.