Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G530400.1 | Wheat | nucleus | 92.13 | 87.23 |
| TraesCS7B01G448000.1 | Wheat | nucleus | 75.84 | 76.7 |
| HORVU7Hr1G117010.1 | Barley | nucleus | 78.65 | 72.92 |
| TraesCS7D01G519200.1 | Wheat | nucleus | 75.28 | 68.37 |
| TraesCS7D01G518100.1 | Wheat | nucleus | 61.8 | 44.0 |
| TraesCS7D01G413100.1 | Wheat | nucleus | 47.19 | 43.52 |
| TraesCS5D01G025800.1 | Wheat | nucleus | 62.92 | 42.11 |
| Os06t0716800-01 | Rice | nucleus | 61.8 | 40.44 |
| Zm00001d014795_P001 | Maize | nucleus | 60.67 | 39.13 |
| EER90398 | Sorghum | nucleus | 59.55 | 38.83 |
| Bra037290.1-P | Field mustard | nucleus | 51.12 | 38.08 |
| CDY26786 | Canola | nucleus | 51.12 | 38.08 |
| CDY47478 | Canola | nucleus | 51.12 | 37.76 |
| CDY02237 | Canola | nucleus | 50.56 | 37.66 |
| Bra013048.1-P | Field mustard | nucleus | 50.0 | 37.24 |
| CDX89748 | Canola | nucleus | 51.69 | 37.1 |
| Bra011580.1-P | Field mustard | nucleus | 46.07 | 35.5 |
| AT2G16770.1 | Thale cress | nucleus | 49.44 | 35.34 |
| GSMUA_Achr3P00670_001 | Banana | nucleus | 53.93 | 34.91 |
| TraesCS1D01G312200.1 | Wheat | nucleus | 44.38 | 34.8 |
| GSMUA_Achr1P14830_001 | Banana | nucleus | 53.37 | 34.55 |
| CDY52654 | Canola | nucleus | 46.07 | 34.45 |
| VIT_03s0038g02420.t01 | Wine grape | nucleus | 51.69 | 33.95 |
| TraesCS3D01G324200.1 | Wheat | nucleus | 40.45 | 33.64 |
| AT4G35040.2 | Thale cress | nucleus | 48.88 | 33.33 |
| CDY17503 | Canola | nucleus | 47.19 | 32.94 |
| KRH24316 | Soybean | nucleus | 50.0 | 32.84 |
| PGSC0003DMT400015830 | Potato | nucleus | 50.0 | 32.72 |
| Solyc01g111580.2.1 | Tomato | nucleus | 49.44 | 32.59 |
| KRH29295 | Soybean | nucleus | 49.44 | 32.59 |
| Bra034668.1-P | Field mustard | nucleus | 46.63 | 32.55 |
| CDX76308 | Canola | nucleus | 47.19 | 30.77 |
| PGSC0003DMT400031184 | Potato | nucleus | 43.26 | 29.73 |
| CDX69107 | Canola | nucleus | 44.94 | 29.52 |
| GSMUA_Achr7P03840_001 | Banana | golgi, mitochondrion, nucleus, plastid | 53.93 | 28.92 |
| Zm00001d036400_P001 | Maize | nucleus | 27.53 | 27.07 |
| Solyc10g055550.1.1 | Tomato | plasma membrane | 44.38 | 25.99 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G518200.1 | EnsemblPlantsGene:TraesCS7D01G518200 | Gene3D:1.20.5.170 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR004827 |
| InterPro:bZIP | ncoils:Coil | PANTHER:PTHR23334 | PANTHER:PTHR23334:SF25 | PFAM:PF07716 | SEG:seg |
| SMART:SM00338 | SUPFAM:SSF57959 | TIGR:cd14686 | MapMan:15.5.4.3 | : | : |
Description
No Description!
Coordinates
chr7D:+:616908220..616908756
Molecular Weight (calculated)
19520.0 Da
IEP (calculated)
7.875
GRAVY (calculated)
-0.568
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSYFDDILM DTEQVACTHT HTCNPPAHHL PHTHTCLHVH SKIAASASSD AGAETPAEFE DAHATSRSKR RRPSGNQAAV RKYREKKKAH TALLEEEAAR
101: LRAMNEQLAK KVQDHAALEA EAARLRCLLV DVRGRIEGEI GAFPYHRRPA KGAGQGGAQV MSSCDFIATC EQPHTCFL
101: LRAMNEQLAK KVQDHAALEA EAARLRCLLV DVRGRIEGEI GAFPYHRRPA KGAGQGGAQV MSSCDFIATC EQPHTCFL
001: MDDGELEFSN SNMGGELPSC SMDSFFDELL RDSHACTHTH TCNPPGPENT HTHTCLHVHT KILPDKVSTD DTSESSGKKR PLGNREAVRK YREKKKAKAA
101: SLEDEVMRLK AVNNQLLKRL QGQAALEAEV TRLKCLLVDI RGRIDGEIGA FPYQKPAVTN VPYSYMMHPC NMQCDVDNLY CLQNGNNGEG ASMNEQGLNG
201: CEFDQLECLA NQNLAGKEIP VCSNGIGTFT VNGSGVNKRK GEPRAAKAV
101: SLEDEVMRLK AVNNQLLKRL QGQAALEAEV TRLKCLLVDI RGRIDGEIGA FPYQKPAVTN VPYSYMMHPC NMQCDVDNLY CLQNGNNGEG ASMNEQGLNG
201: CEFDQLECLA NQNLAGKEIP VCSNGIGTFT VNGSGVNKRK GEPRAAKAV
Arabidopsis Description
BZIP23Basic leucine zipper 23 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTS2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.