Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- extracellular 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_02s0012g01920.t01 | |
| VIT_02s0012g01930.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G16770.1 | VIT_02s0012g01920.t01 | AT1G32230.1 | 19548978 |
| AT2G16770.1 | VIT_02s0012g01930.t01 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g111580.2.1 | Tomato | nucleus | 68.27 | 68.52 |
| PGSC0003DMT400015830 | Potato | nucleus | 67.53 | 67.28 |
| KRH24316 | Soybean | nucleus | 67.16 | 67.16 |
| KRH29295 | Soybean | nucleus | 64.94 | 65.19 |
| Bra037290.1-P | Field mustard | nucleus | 55.35 | 62.76 |
| CDY26786 | Canola | nucleus | 54.98 | 62.34 |
| CDY47478 | Canola | nucleus | 55.35 | 62.24 |
| CDX89748 | Canola | nucleus | 56.83 | 62.1 |
| Bra013048.1-P | Field mustard | nucleus | 54.61 | 61.92 |
| AT2G16770.1 | Thale cress | nucleus | 56.83 | 61.85 |
| CDY02237 | Canola | nucleus | 54.24 | 61.51 |
| PGSC0003DMT400031184 | Potato | nucleus | 57.2 | 59.85 |
| AT4G35040.2 | Thale cress | nucleus | 57.2 | 59.39 |
| Bra011580.1-P | Field mustard | nucleus | 49.45 | 58.01 |
| Bra034668.1-P | Field mustard | nucleus | 53.51 | 56.86 |
| CDY52654 | Canola | nucleus | 49.45 | 56.3 |
| CDY17503 | Canola | nucleus | 52.77 | 56.08 |
| GSMUA_Achr1P14830_001 | Banana | nucleus | 54.98 | 54.18 |
| GSMUA_Achr3P00670_001 | Banana | nucleus | 54.98 | 54.18 |
| TraesCS7A01G530400.1 | Wheat | nucleus | 36.9 | 53.19 |
| CDX69107 | Canola | nucleus | 52.77 | 52.77 |
| CDX76308 | Canola | nucleus | 53.14 | 52.75 |
| Os06t0716800-01 | Rice | nucleus | 52.77 | 52.57 |
| Zm00001d014795_P001 | Maize | nucleus | 52.77 | 51.81 |
| TraesCS7D01G518200.1 | Wheat | nucleus | 33.95 | 51.69 |
| EER90398 | Sorghum | nucleus | 52.03 | 51.65 |
| Solyc10g055550.1.1 | Tomato | plasma membrane | 57.2 | 50.99 |
| TraesCS7A01G531800.1 | Wheat | nucleus | 36.53 | 50.77 |
| TraesCS5D01G025800.1 | Wheat | nucleus | 49.82 | 50.75 |
| TraesCS7D01G519200.1 | Wheat | nucleus | 36.16 | 50.0 |
| TraesCS7B01G448000.1 | Wheat | nucleus | 32.47 | 50.0 |
| TraesCS5B01G017700.1 | Wheat | nucleus | 48.71 | 49.81 |
| HORVU5Hr1G005780.2 | Barley | nucleus | 49.08 | 49.44 |
| HORVU6Hr1G002780.1 | Barley | nucleus | 21.77 | 48.76 |
| HORVU7Hr1G117170.1 | Barley | nucleus | 36.16 | 48.76 |
| HORVU5Hr1G116780.1 | Barley | nucleus | 38.38 | 48.6 |
| TraesCS7D01G518100.1 | Wheat | nucleus | 44.65 | 48.4 |
| TraesCS7B01G447900.1 | Wheat | nucleus | 45.39 | 48.24 |
| TraesCS7A01G530300.1 | Wheat | nucleus | 45.02 | 48.22 |
| TraesCS7B01G449200.1 | Wheat | nucleus | 35.79 | 47.55 |
| HORVU7Hr1G117010.1 | Barley | nucleus | 33.58 | 47.4 |
| TraesCS7D01G413100.1 | Wheat | nucleus | 33.21 | 46.63 |
| HORVU7Hr1G117020.4 | Barley | nucleus | 44.28 | 45.98 |
| Zm00001d036400_P001 | Maize | nucleus | 30.26 | 45.3 |
| TraesCS5A01G020700.1 | Wheat | nucleus | 48.71 | 45.05 |
| GSMUA_Achr7P03840_001 | Banana | golgi, mitochondrion, nucleus, plastid | 52.4 | 42.77 |
| VIT_13s0158g00380.t01 | Wine grape | nucleus | 36.9 | 34.97 |
| TraesCS7A01G420400.1 | Wheat | nucleus | 38.01 | 33.66 |
| TraesCS7B01G321300.1 | Wheat | nucleus | 38.75 | 32.41 |
| HORVU1Hr1G072090.1 | Barley | plastid | 19.56 | 31.18 |
Protein Annotations
| Gene3D:1.20.5.170 | EntrezGene:100243471 | wikigene:100243471 | MapMan:15.5.4.1 | MapMan:15.5.4.3 | EMBL:AM431253 |
| ProteinID:CAN73631 | ProteinID:CAN73631.1 | ProteinID:CCB60618 | ProteinID:CCB60618.1 | ncoils:Coil | UniProt:F6I102 |
| EMBL:FN596508 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR004827 | EntrezGene:LOC100243471 | wikigene:LOC100243471 |
| PFAM:PF07716 | PFscan:PS50217 | PANTHER:PTHR23334 | PANTHER:PTHR23334:SF25 | SMART:SM00338 | SUPFAM:SSF57959 |
| TIGR:TC70977 | UniParc:UPI000210A7E8 | ArrayExpress:VIT_03s0038g02420 | EnsemblPlantsGene:VIT_03s0038g02420 | EnsemblPlants:VIT_03s0038g02420.t01 | unigene:Vvi.12832 |
| RefSeq:XP_002278836 | RefSeq:XP_002278836.1 | InterPro:bZIP | SEG:seg | : | : |
Description
No Description!
Coordinates
chr3:+:1679507..1683223
Molecular Weight (calculated)
29297.3 Da
IEP (calculated)
6.499
GRAVY (calculated)
-0.600
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDGELDFSN QDVFSSPNMA DLPSSCSMDS FFDEILKDTH ACTHTHTCNP PGPDFSHTHT CFHVHTKIVP APAEDNIATD DTAESAEKKS KKRPLGNREA
101: VRKYREKKKA RAASLEDEVV RLRSLNQQLL KRLQGQAALE AEVARLKCLL VDIRGRIEGE IGSFPYQKSA KSGDGYPNMV NQSLSGAFVM NPCNLQCDDQ
201: VYCLHPGVEA KNGEAAGLNG QGFNGCDFEN IPCVGNPSAA LKELPGCGVG NGITANSSIP NKRRRGSGSN S
101: VRKYREKKKA RAASLEDEVV RLRSLNQQLL KRLQGQAALE AEVARLKCLL VDIRGRIEGE IGSFPYQKSA KSGDGYPNMV NQSLSGAFVM NPCNLQCDDQ
201: VYCLHPGVEA KNGEAAGLNG QGFNGCDFEN IPCVGNPSAA LKELPGCGVG NGITANSSIP NKRRRGSGSN S
001: MEDGELDFSN QEVFSSSEMG ELPPSNCSMD SFFDGLLMDT NAACTHTHTC NPTGPENTHT HTCFHVHTKI LPDESDEKVS TDDTAESCGK KGEKRPLGNR
101: EAVRKYREKK KAKAASLEDE VARLRAVNQQ LVKRLQNQAT LEAEVSRLKC LLVDLRGRID GEIGSFPYQK PMAANIPSFS HMMNPCNVQC DDEVYCPQNV
201: FGVNSQEGAS INDQGLSGCD FDQLQCMANQ NLNGNGNGSF SNVNTSVSNK RKGGHRASRA V
101: EAVRKYREKK KAKAASLEDE VARLRAVNQQ LVKRLQNQAT LEAEVSRLKC LLVDLRGRID GEIGSFPYQK PMAANIPSFS HMMNPCNVQC DDEVYCPQNV
201: FGVNSQEGAS INDQGLSGCD FDQLQCMANQ NLNGNGNGSF SNVNTSVSNK RKGGHRASRA V
Arabidopsis Description
BZIP19Basic leucine zipper 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8VY76]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.