Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G025800.1 | Wheat | nucleus | 85.67 | 94.36 |
| TraesCS5B01G017700.1 | Wheat | nucleus | 83.96 | 92.83 |
| HORVU5Hr1G005780.2 | Barley | nucleus | 76.45 | 83.27 |
| Os06t0716800-01 | Rice | nucleus | 68.26 | 73.53 |
| EER90398 | Sorghum | nucleus | 65.19 | 69.96 |
| Zm00001d014795_P001 | Maize | nucleus | 63.48 | 67.39 |
| Zm00001d036400_P001 | Maize | nucleus | 40.96 | 66.3 |
| TraesCS7A01G530300.1 | Wheat | nucleus | 55.97 | 64.82 |
| TraesCS7A01G530400.1 | Wheat | nucleus | 40.61 | 63.3 |
| TraesCS7A01G531800.1 | Wheat | nucleus | 39.59 | 59.49 |
| GSMUA_Achr3P00670_001 | Banana | nucleus | 51.54 | 54.91 |
| GSMUA_Achr1P14830_001 | Banana | nucleus | 49.83 | 53.09 |
| VIT_03s0038g02420.t01 | Wine grape | nucleus | 45.05 | 48.71 |
| AT2G16770.1 | Thale cress | nucleus | 40.61 | 47.79 |
| Bra037290.1-P | Field mustard | nucleus | 38.57 | 47.28 |
| CDY02237 | Canola | nucleus | 38.23 | 46.86 |
| CDY26786 | Canola | nucleus | 38.23 | 46.86 |
| Solyc01g111580.2.1 | Tomato | nucleus | 43.0 | 46.67 |
| CDY47478 | Canola | nucleus | 38.23 | 46.47 |
| Bra013048.1-P | Field mustard | nucleus | 37.88 | 46.44 |
| TraesCS7A01G420400.1 | Wheat | nucleus | 48.12 | 46.08 |
| AT4G35040.2 | Thale cress | nucleus | 40.96 | 45.98 |
| PGSC0003DMT400015830 | Potato | nucleus | 42.66 | 45.96 |
| CDX89748 | Canola | nucleus | 38.57 | 45.56 |
| KRH29295 | Soybean | nucleus | 40.96 | 44.44 |
| KRH24316 | Soybean | nucleus | 40.96 | 44.28 |
| Bra011580.1-P | Field mustard | nucleus | 34.81 | 44.16 |
| Bra034668.1-P | Field mustard | nucleus | 38.23 | 43.92 |
| CDY17503 | Canola | nucleus | 38.23 | 43.92 |
| CDY52654 | Canola | nucleus | 34.81 | 42.86 |
| PGSC0003DMT400031184 | Potato | nucleus | 37.54 | 42.47 |
| CDX76308 | Canola | nucleus | 38.23 | 41.03 |
| GSMUA_Achr7P03840_001 | Banana | golgi, mitochondrion, nucleus, plastid | 46.42 | 40.96 |
| TraesCS1A01G311900.1 | Wheat | nucleus | 31.4 | 40.53 |
| CDX69107 | Canola | nucleus | 37.2 | 40.22 |
| TraesCS3A01G330800.1 | Wheat | nucleus | 28.33 | 38.78 |
| Solyc10g055550.1.1 | Tomato | plasma membrane | 37.88 | 36.51 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G020700.1 | EnsemblPlantsGene:TraesCS5A01G020700 | Gene3D:1.20.5.170 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR004827 |
| InterPro:bZIP | ncoils:Coil | PANTHER:PTHR23334 | PANTHER:PTHR23334:SF25 | PFAM:PF07716 | SEG:seg |
| SMART:SM00338 | SUPFAM:SSF57959 | TIGR:cd14686 | MapMan:15.5.4.1 | MapMan:15.5.4.3 | : |
Description
No Description!
Coordinates
chr5A:+:16974437..16975461
Molecular Weight (calculated)
31364.1 Da
IEP (calculated)
6.165
GRAVY (calculated)
-0.404
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MERDRCLLFH CQVTGVRSWQ QLVAAMDDGD LDFSNPEAYL CSDTGADLPG GGCSMDSYFD GILNDTEHLA CTHTHTCNPP VDDSSHTHTC VHVHTKIVSA
101: SSDGGADSPA ENSGASKKRP SGNRAAVRKY REKKKAHTAL LEEEVVQLKA LNKQLLKKLQ NHAALEAEAA RLRCLLVDIR GRIDGEIGTF PYQRPVKNVD
201: LVSGVDQGGF LGSAQVMNSC DFRCNDQMYC NTGMQMRTMG DDGAMSGQVF GQGTGDIANI QCIGGVKSGF TMPPGCGGMG TLPSGCLPSS EKQ
101: SSDGGADSPA ENSGASKKRP SGNRAAVRKY REKKKAHTAL LEEEVVQLKA LNKQLLKKLQ NHAALEAEAA RLRCLLVDIR GRIDGEIGTF PYQRPVKNVD
201: LVSGVDQGGF LGSAQVMNSC DFRCNDQMYC NTGMQMRTMG DDGAMSGQVF GQGTGDIANI QCIGGVKSGF TMPPGCGGMG TLPSGCLPSS EKQ
001: MEDGELDFSN QEVFSSSEMG ELPPSNCSMD SFFDGLLMDT NAACTHTHTC NPTGPENTHT HTCFHVHTKI LPDESDEKVS TDDTAESCGK KGEKRPLGNR
101: EAVRKYREKK KAKAASLEDE VARLRAVNQQ LVKRLQNQAT LEAEVSRLKC LLVDLRGRID GEIGSFPYQK PMAANIPSFS HMMNPCNVQC DDEVYCPQNV
201: FGVNSQEGAS INDQGLSGCD FDQLQCMANQ NLNGNGNGSF SNVNTSVSNK RKGGHRASRA V
101: EAVRKYREKK KAKAASLEDE VARLRAVNQQ LVKRLQNQAT LEAEVSRLKC LLVDLRGRID GEIGSFPYQK PMAANIPSFS HMMNPCNVQC DDEVYCPQNV
201: FGVNSQEGAS INDQGLSGCD FDQLQCMANQ NLNGNGNGSF SNVNTSVSNK RKGGHRASRA V
Arabidopsis Description
BZIP19Basic leucine zipper 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8VY76]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.