Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400038368 | |
| PGSC0003DMT400043197 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G16770.1 | PGSC0003DMT400038368 | AT1G32230.1 | 19548978 |
| AT2G16770.1 | PGSC0003DMT400043197 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g055550.1.1 | Tomato | plasma membrane | 92.28 | 78.62 |
| PGSC0003DMT400015830 | Potato | nucleus | 64.09 | 61.03 |
| VIT_03s0038g02420.t01 | Wine grape | nucleus | 59.85 | 57.2 |
| CDY26786 | Canola | nucleus | 50.58 | 54.81 |
| CDY47478 | Canola | nucleus | 50.97 | 54.77 |
| Bra037290.1-P | Field mustard | nucleus | 50.19 | 54.39 |
| AT2G16770.1 | Thale cress | nucleus | 51.74 | 53.82 |
| Bra013048.1-P | Field mustard | nucleus | 49.03 | 53.14 |
| CDY02237 | Canola | nucleus | 48.26 | 52.3 |
| KRH24316 | Soybean | nucleus | 54.44 | 52.03 |
| CDX89748 | Canola | nucleus | 49.81 | 52.02 |
| KRH29295 | Soybean | nucleus | 53.67 | 51.48 |
| AT4G35040.2 | Thale cress | nucleus | 50.97 | 50.57 |
| CDY17503 | Canola | nucleus | 48.65 | 49.41 |
| Bra034668.1-P | Field mustard | nucleus | 48.65 | 49.41 |
| Bra011580.1-P | Field mustard | nucleus | 43.24 | 48.48 |
| CDY52654 | Canola | nucleus | 43.24 | 47.06 |
| CDX69107 | Canola | nucleus | 47.88 | 45.76 |
| CDX76308 | Canola | nucleus | 47.49 | 45.05 |
| GSMUA_Achr3P00670_001 | Banana | nucleus | 47.49 | 44.73 |
| GSMUA_Achr1P14830_001 | Banana | nucleus | 46.72 | 44.0 |
| TraesCS7D01G518200.1 | Wheat | nucleus | 29.73 | 43.26 |
| TraesCS7A01G530400.1 | Wheat | nucleus | 30.89 | 42.55 |
| TraesCS5D01G025800.1 | Wheat | nucleus | 42.86 | 41.73 |
| TraesCS5B01G017700.1 | Wheat | nucleus | 42.47 | 41.51 |
| EER90398 | Sorghum | nucleus | 43.63 | 41.39 |
| Os06t0716800-01 | Rice | nucleus | 43.24 | 41.18 |
| HORVU5Hr1G005780.2 | Barley | nucleus | 42.47 | 40.89 |
| Zm00001d014795_P001 | Maize | nucleus | 43.24 | 40.58 |
| TraesCS7A01G531800.1 | Wheat | nucleus | 30.12 | 40.0 |
| TraesCS7B01G448000.1 | Wheat | nucleus | 27.03 | 39.77 |
| TraesCS7D01G518100.1 | Wheat | nucleus | 38.22 | 39.6 |
| TraesCS7A01G530300.1 | Wheat | nucleus | 38.61 | 39.53 |
| TraesCS7D01G519200.1 | Wheat | nucleus | 29.73 | 39.29 |
| TraesCS7B01G447900.1 | Wheat | nucleus | 38.22 | 38.82 |
| HORVU7Hr1G117010.1 | Barley | nucleus | 28.57 | 38.54 |
| HORVU5Hr1G116780.1 | Barley | nucleus | 31.66 | 38.32 |
| HORVU7Hr1G117020.4 | Barley | nucleus | 38.61 | 38.31 |
| TraesCS7B01G449200.1 | Wheat | nucleus | 29.73 | 37.75 |
| TraesCS5A01G020700.1 | Wheat | nucleus | 42.47 | 37.54 |
| HORVU7Hr1G117170.1 | Barley | nucleus | 28.96 | 37.31 |
| TraesCS7D01G413100.1 | Wheat | nucleus | 27.8 | 37.31 |
| HORVU6Hr1G002780.1 | Barley | nucleus | 17.37 | 37.19 |
| GSMUA_Achr7P03840_001 | Banana | golgi, mitochondrion, nucleus, plastid | 44.79 | 34.94 |
| Zm00001d036400_P001 | Maize | nucleus | 23.94 | 34.25 |
| TraesCS7A01G420400.1 | Wheat | nucleus | 34.36 | 29.09 |
| HORVU1Hr1G072090.1 | Barley | plastid | 17.76 | 27.06 |
| TraesCS7B01G321300.1 | Wheat | nucleus | 31.66 | 25.31 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | MapMan:15.5.4.3 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR004827 | UniProt:M1AVA6 | PFAM:PF07716 | EnsemblPlantsGene:PGSC0003DMG400011944 | PGSC:PGSC0003DMG400011944 | EnsemblPlants:PGSC0003DMT400031184 |
| PANTHER:PTHR23334 | PANTHER:PTHR23334:SF25 | SMART:SM00338 | SUPFAM:SSF57959 | UniParc:UPI00029605D2 | InterPro:bZIP |
| SEG:seg | : | : | : | : | : |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011944]
Coordinates
chr10:+:47171367..47174532
Molecular Weight (calculated)
28365.4 Da
IEP (calculated)
7.337
GRAVY (calculated)
-0.620
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGRELEFFS QEVLSSSTFS EIPESSPTNK RFNEILTDVH ACIHAHTCNP PGPDNSHTHT CYHVHTKVVT PPCDDTTAES TAANVGKKRP LSNKEAVRKY
101: CEKKKARVAS LEDEVVRLRD INQQLLNRLQ GQAVLEAEVS RLKCLLVDIR GRIAGEIGSF PYQKPMEGTD VYQNLRGTYV MNPCNLQCDD QVYCLQPNSE
201: ESNGQGLNSC GFETPQCSGS QGLKEVPGCA LGYGTPTANA SRGNKRKRTG GKCAAMVSP
101: CEKKKARVAS LEDEVVRLRD INQQLLNRLQ GQAVLEAEVS RLKCLLVDIR GRIAGEIGSF PYQKPMEGTD VYQNLRGTYV MNPCNLQCDD QVYCLQPNSE
201: ESNGQGLNSC GFETPQCSGS QGLKEVPGCA LGYGTPTANA SRGNKRKRTG GKCAAMVSP
001: MDDGELEFSN SNMGGELPSC SMDSFFDELL RDSHACTHTH TCNPPGPENT HTHTCLHVHT KILPDKVSTD DTSESSGKKR PLGNREAVRK YREKKKAKAA
101: SLEDEVMRLK AVNNQLLKRL QGQAALEAEV TRLKCLLVDI RGRIDGEIGA FPYQKPAVTN VPYSYMMHPC NMQCDVDNLY CLQNGNNGEG ASMNEQGLNG
201: CEFDQLECLA NQNLAGKEIP VCSNGIGTFT VNGSGVNKRK GEPRAAKAV
101: SLEDEVMRLK AVNNQLLKRL QGQAALEAEV TRLKCLLVDI RGRIDGEIGA FPYQKPAVTN VPYSYMMHPC NMQCDVDNLY CLQNGNNGEG ASMNEQGLNG
201: CEFDQLECLA NQNLAGKEIP VCSNGIGTFT VNGSGVNKRK GEPRAAKAV
Arabidopsis Description
BZIP23Basic leucine zipper 23 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTS2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.