Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G017700.1 | Wheat | nucleus | 91.35 | 91.7 |
| TraesCS5A01G020700.1 | Wheat | nucleus | 94.36 | 85.67 |
| HORVU5Hr1G005780.2 | Barley | nucleus | 83.46 | 82.53 |
| Os06t0716800-01 | Rice | nucleus | 74.81 | 73.16 |
| EER90398 | Sorghum | nucleus | 69.55 | 67.77 |
| Zm00001d014795_P001 | Maize | nucleus | 68.05 | 65.58 |
| TraesCS7D01G518100.1 | Wheat | nucleus | 60.53 | 64.4 |
| Zm00001d036400_P001 | Maize | nucleus | 42.86 | 62.98 |
| TraesCS7D01G518200.1 | Wheat | nucleus | 42.11 | 62.92 |
| TraesCS7D01G519200.1 | Wheat | nucleus | 42.11 | 57.14 |
| TraesCS7D01G413100.1 | Wheat | nucleus | 40.98 | 56.48 |
| GSMUA_Achr3P00670_001 | Banana | nucleus | 57.89 | 56.0 |
| GSMUA_Achr1P14830_001 | Banana | nucleus | 55.64 | 53.82 |
| VIT_03s0038g02420.t01 | Wine grape | nucleus | 50.75 | 49.82 |
| Bra037290.1-P | Field mustard | nucleus | 43.61 | 48.54 |
| AT2G16770.1 | Thale cress | nucleus | 45.11 | 48.19 |
| CDY26786 | Canola | nucleus | 43.23 | 48.12 |
| CDY47478 | Canola | nucleus | 43.23 | 47.72 |
| CDY02237 | Canola | nucleus | 42.86 | 47.7 |
| Solyc01g111580.2.1 | Tomato | nucleus | 48.12 | 47.41 |
| Bra013048.1-P | Field mustard | nucleus | 42.48 | 47.28 |
| PGSC0003DMT400015830 | Potato | nucleus | 47.74 | 46.69 |
| CDX89748 | Canola | nucleus | 43.23 | 46.37 |
| AT4G35040.2 | Thale cress | nucleus | 45.49 | 46.36 |
| KRH24316 | Soybean | nucleus | 45.86 | 45.02 |
| KRH29295 | Soybean | nucleus | 45.49 | 44.81 |
| Bra011580.1-P | Field mustard | nucleus | 38.72 | 44.59 |
| Bra034668.1-P | Field mustard | nucleus | 42.48 | 44.31 |
| CDY17503 | Canola | nucleus | 42.48 | 44.31 |
| CDY52654 | Canola | nucleus | 38.72 | 43.28 |
| PGSC0003DMT400031184 | Potato | nucleus | 41.73 | 42.86 |
| CDX76308 | Canola | nucleus | 42.48 | 41.39 |
| GSMUA_Achr7P03840_001 | Banana | golgi, mitochondrion, nucleus, plastid | 51.13 | 40.96 |
| CDX69107 | Canola | nucleus | 40.98 | 40.22 |
| TraesCS1D01G312200.1 | Wheat | nucleus | 33.83 | 39.65 |
| TraesCS3D01G324200.1 | Wheat | nucleus | 31.58 | 39.25 |
| Solyc10g055550.1.1 | Tomato | plasma membrane | 41.73 | 36.51 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G025800.1 | EnsemblPlantsGene:TraesCS5D01G025800 | Gene3D:1.20.5.170 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR004827 |
| InterPro:bZIP | ncoils:Coil | PANTHER:PTHR23334 | PANTHER:PTHR23334:SF25 | PFAM:PF07716 | SEG:seg |
| SMART:SM00338 | SUPFAM:SSF57959 | TIGR:cd14686 | MapMan:15.5.4.1 | MapMan:15.5.4.3 | : |
Description
No Description!
Coordinates
chr5D:+:23074028..23074828
Molecular Weight (calculated)
28268.2 Da
IEP (calculated)
5.546
GRAVY (calculated)
-0.521
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDGDLDFSN PEAYLDTGAD LPGGGCSMDS YFDEYLNDTE HLACTHTHTC NPPVDDSSHT HTCVHVHTKI VSASSDGGAD SPAENSGASK KRPSGNRAAV
101: RKYREKKKAH TALLEEEVVQ LKALNKQLLK KLQNHAALEA EAARLRCLLV DIRGRIDGEI GTFPYQRPVK NGDLVSGVDQ GGFLGSAQVM NSCDFRCNDQ
201: MYCNPGMQMR AMGDDGAMSG QVFGQGTGDI ANIQCMGGAK SGFTMPPGCG GMGTMPSGCL PGSEKQ
101: RKYREKKKAH TALLEEEVVQ LKALNKQLLK KLQNHAALEA EAARLRCLLV DIRGRIDGEI GTFPYQRPVK NGDLVSGVDQ GGFLGSAQVM NSCDFRCNDQ
201: MYCNPGMQMR AMGDDGAMSG QVFGQGTGDI ANIQCMGGAK SGFTMPPGCG GMGTMPSGCL PGSEKQ
001: MEDGELDFSN QEVFSSSEMG ELPPSNCSMD SFFDGLLMDT NAACTHTHTC NPTGPENTHT HTCFHVHTKI LPDESDEKVS TDDTAESCGK KGEKRPLGNR
101: EAVRKYREKK KAKAASLEDE VARLRAVNQQ LVKRLQNQAT LEAEVSRLKC LLVDLRGRID GEIGSFPYQK PMAANIPSFS HMMNPCNVQC DDEVYCPQNV
201: FGVNSQEGAS INDQGLSGCD FDQLQCMANQ NLNGNGNGSF SNVNTSVSNK RKGGHRASRA V
101: EAVRKYREKK KAKAASLEDE VARLRAVNQQ LVKRLQNQAT LEAEVSRLKC LLVDLRGRID GEIGSFPYQK PMAANIPSFS HMMNPCNVQC DDEVYCPQNV
201: FGVNSQEGAS INDQGLSGCD FDQLQCMANQ NLNGNGNGSF SNVNTSVSNK RKGGHRASRA V
Arabidopsis Description
BZIP19Basic leucine zipper 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8VY76]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.