Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G16770.1 | CDY22597 | AT1G32230.1 | 19548978 |
| AT2G16770.1 | CDY41739 | AT1G32230.1 | 19548978 |
| AT2G16770.1 | CDY43007 | AT1G32230.1 | 19548978 |
| AT2G16770.1 | CDY60257 | AT1G32230.1 | 19548978 |
| AT2G16770.1 | CDY67026 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26786 | Canola | nucleus | 97.1 | 97.91 |
| Bra037290.1-P | Field mustard | nucleus | 95.85 | 96.65 |
| CDX89748 | Canola | nucleus | 88.38 | 85.89 |
| CDY02237 | Canola | nucleus | 83.4 | 84.1 |
| AT2G16770.1 | Thale cress | nucleus | 81.33 | 78.71 |
| CDY17503 | Canola | nucleus | 66.81 | 63.14 |
| CDY52654 | Canola | nucleus | 59.34 | 60.08 |
| CDX76308 | Canola | nucleus | 65.98 | 58.24 |
| CDX69107 | Canola | nucleus | 63.49 | 56.46 |
| KRH29295 | Soybean | nucleus | 63.07 | 56.3 |
| Solyc01g111580.2.1 | Tomato | nucleus | 63.07 | 56.3 |
| PGSC0003DMT400015830 | Potato | nucleus | 63.49 | 56.25 |
| KRH24316 | Soybean | nucleus | 63.07 | 56.09 |
| VIT_03s0038g02420.t01 | Wine grape | nucleus | 62.24 | 55.35 |
| TraesCS7D01G518200.1 | Wheat | nucleus | 37.76 | 51.12 |
| PGSC0003DMT400031184 | Potato | nucleus | 54.77 | 50.97 |
| TraesCS7A01G530400.1 | Wheat | nucleus | 39.0 | 50.0 |
| TraesCS7A01G531800.1 | Wheat | nucleus | 40.25 | 49.74 |
| TraesCS7B01G448000.1 | Wheat | nucleus | 35.27 | 48.3 |
| TraesCS7D01G519200.1 | Wheat | nucleus | 39.0 | 47.96 |
| HORVU5Hr1G116780.1 | Barley | nucleus | 41.08 | 46.26 |
| GSMUA_Achr3P00670_001 | Banana | nucleus | 52.28 | 45.82 |
| TraesCS7D01G518100.1 | Wheat | nucleus | 47.3 | 45.6 |
| HORVU7Hr1G117010.1 | Barley | nucleus | 35.68 | 44.79 |
| TraesCS7B01G447900.1 | Wheat | nucleus | 47.3 | 44.71 |
| HORVU6Hr1G002780.1 | Barley | nucleus | 22.41 | 44.63 |
| TraesCS7B01G449200.1 | Wheat | nucleus | 37.76 | 44.61 |
| HORVU7Hr1G117170.1 | Barley | nucleus | 36.93 | 44.28 |
| GSMUA_Achr1P14830_001 | Banana | nucleus | 50.21 | 44.0 |
| TraesCS7A01G530300.1 | Wheat | nucleus | 46.06 | 43.87 |
| HORVU7Hr1G117020.4 | Barley | nucleus | 47.3 | 43.68 |
| Zm00001d014795_P001 | Maize | nucleus | 49.79 | 43.48 |
| TraesCS5D01G025800.1 | Wheat | nucleus | 47.72 | 43.23 |
| Os06t0716800-01 | Rice | nucleus | 48.55 | 43.01 |
| EER90398 | Sorghum | nucleus | 48.55 | 42.86 |
| Solyc10g055550.1.1 | Tomato | plasma membrane | 53.53 | 42.43 |
| TraesCS5B01G017700.1 | Wheat | nucleus | 46.47 | 42.26 |
| CDY23178 | Canola | nucleus | 32.37 | 41.49 |
| TraesCS7D01G413100.1 | Wheat | nucleus | 33.2 | 41.45 |
| CDY60641 | Canola | nucleus | 31.95 | 40.96 |
| HORVU5Hr1G005780.2 | Barley | nucleus | 45.64 | 40.89 |
| TraesCS5A01G020700.1 | Wheat | nucleus | 46.47 | 38.23 |
| Zm00001d036400_P001 | Maize | nucleus | 27.39 | 36.46 |
| GSMUA_Achr7P03840_001 | Banana | golgi, mitochondrion, nucleus, plastid | 49.38 | 35.84 |
| TraesCS7A01G420400.1 | Wheat | nucleus | 41.49 | 32.68 |
| HORVU1Hr1G072090.1 | Barley | plastid | 21.99 | 31.18 |
| TraesCS7B01G321300.1 | Wheat | nucleus | 40.66 | 30.25 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | MapMan:15.5.4.3 | GO:A0A078IE88 | UniProt:A0A078IE88 | EnsemblPlants:CDY47478 |
| ProteinID:CDY47478 | ProteinID:CDY47478.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00087531001 |
| InterPro:IPR004827 | PFAM:PF07716 | PFscan:PS50217 | PANTHER:PTHR23334 | PANTHER:PTHR23334:SF25 | SMART:SM00338 |
| SUPFAM:SSF57959 | UniParc:UPI0004EE6E2D | InterPro:bZIP | SEG:seg | : | : |
Description
BnaA09g08870DBnaA09g08870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IE88]
Coordinates
chrLK032718:+:70590..71768
Molecular Weight (calculated)
26260.8 Da
IEP (calculated)
6.159
GRAVY (calculated)
-0.746
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDGELEFPP SSSSMDSFLE ELLKDSHACT HTHTCNPPGP ENTHTHTCLH VHTKILPAPQ SDDKETTDDT SESSGKKSKK RPSGNREAVR KYREKKKAKA
101: ASLEDEVLRL RAVNNQLMKR LQGQAALEAE VTRLKCLLVD IRGRIEGEIG AFPYQKPQPF SYRMQPCNMP CDVDDLYCLQ NGNSGEGILM NGQGLNGCEF
201: DQLQCLGDQN LAGCSNGNGT FDVDASGANK SKGGTCAAKA V
101: ASLEDEVLRL RAVNNQLMKR LQGQAALEAE VTRLKCLLVD IRGRIEGEIG AFPYQKPQPF SYRMQPCNMP CDVDDLYCLQ NGNSGEGILM NGQGLNGCEF
201: DQLQCLGDQN LAGCSNGNGT FDVDASGANK SKGGTCAAKA V
001: MDDGELEFSN SNMGGELPSC SMDSFFDELL RDSHACTHTH TCNPPGPENT HTHTCLHVHT KILPDKVSTD DTSESSGKKR PLGNREAVRK YREKKKAKAA
101: SLEDEVMRLK AVNNQLLKRL QGQAALEAEV TRLKCLLVDI RGRIDGEIGA FPYQKPAVTN VPYSYMMHPC NMQCDVDNLY CLQNGNNGEG ASMNEQGLNG
201: CEFDQLECLA NQNLAGKEIP VCSNGIGTFT VNGSGVNKRK GEPRAAKAV
101: SLEDEVMRLK AVNNQLLKRL QGQAALEAEV TRLKCLLVDI RGRIDGEIGA FPYQKPAVTN VPYSYMMHPC NMQCDVDNLY CLQNGNNGEG ASMNEQGLNG
201: CEFDQLECLA NQNLAGKEIP VCSNGIGTFT VNGSGVNKRK GEPRAAKAV
Arabidopsis Description
BZIP23Basic leucine zipper 23 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTS2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.