Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G413100.1 | Wheat | nucleus | 44.44 | 74.61 |
| TraesCS7A01G420400.1 | Wheat | nucleus | 51.85 | 54.9 |
| TraesCS7B01G447900.1 | Wheat | nucleus | 42.9 | 54.51 |
| TraesCS7B01G448000.1 | Wheat | nucleus | 28.7 | 52.84 |
| EER90398 | Sorghum | nucleus | 41.05 | 48.72 |
| TraesCS5B01G017700.1 | Wheat | nucleus | 39.81 | 48.68 |
| Zm00001d014795_P001 | Maize | nucleus | 41.36 | 48.55 |
| Os06t0716800-01 | Rice | nucleus | 40.43 | 48.16 |
| TraesCS7B01G449200.1 | Wheat | nucleus | 29.63 | 47.06 |
| CDY26786 | Canola | nucleus | 30.56 | 41.42 |
| Bra037290.1-P | Field mustard | nucleus | 30.56 | 41.42 |
| CDY02237 | Canola | nucleus | 30.25 | 41.0 |
| Bra013048.1-P | Field mustard | nucleus | 30.25 | 41.0 |
| Zm00001d036400_P001 | Maize | nucleus | 22.84 | 40.88 |
| CDY47478 | Canola | nucleus | 30.25 | 40.66 |
| AT2G16770.1 | Thale cress | nucleus | 31.17 | 40.56 |
| CDX89748 | Canola | nucleus | 30.56 | 39.92 |
| Bra011580.1-P | Field mustard | nucleus | 28.4 | 39.83 |
| Bra034668.1-P | Field mustard | nucleus | 30.86 | 39.22 |
| CDY17503 | Canola | nucleus | 30.56 | 38.82 |
| VIT_03s0038g02420.t01 | Wine grape | nucleus | 32.41 | 38.75 |
| CDY52654 | Canola | nucleus | 28.4 | 38.66 |
| AT4G35040.2 | Thale cress | nucleus | 30.86 | 38.31 |
| KRH24316 | Soybean | nucleus | 31.79 | 38.01 |
| GSMUA_Achr3P00670_001 | Banana | nucleus | 32.1 | 37.82 |
| KRH29295 | Soybean | nucleus | 31.48 | 37.78 |
| GSMUA_Achr1P14830_001 | Banana | nucleus | 31.17 | 36.73 |
| TraesCS1B01G323600.1 | Wheat | nucleus | 25.93 | 36.68 |
| CDX76308 | Canola | nucleus | 30.56 | 36.26 |
| PGSC0003DMT400015830 | Potato | nucleus | 29.63 | 35.29 |
| Solyc01g111580.2.1 | Tomato | nucleus | 29.32 | 35.19 |
| CDX69107 | Canola | nucleus | 29.32 | 35.06 |
| GSMUA_Achr7P03840_001 | Banana | golgi, mitochondrion, nucleus, plastid | 32.72 | 31.93 |
| PGSC0003DMT400031184 | Potato | nucleus | 25.31 | 31.66 |
| TraesCS3B01G360900.1 | Wheat | endoplasmic reticulum | 24.07 | 30.83 |
| Solyc10g055550.1.1 | Tomato | plasma membrane | 26.54 | 28.29 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | MapMan:15.5.4.3 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR004827 | PFAM:PF07716 | PFscan:PS50217 | PANTHER:PTHR23334 | PANTHER:PTHR23334:SF25 | SMART:SM00338 |
| SUPFAM:SSF57959 | EnsemblPlantsGene:TraesCS7B01G321300 | EnsemblPlants:TraesCS7B01G321300.1 | InterPro:bZIP | TIGR:cd14686 | SEG:seg |
Description
No Description!
Coordinates
chr7B:-:571892409..571893652
Molecular Weight (calculated)
36460.9 Da
IEP (calculated)
6.624
GRAVY (calculated)
-0.753
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDDIGRKAS TPRKETKSMR TREGITHENV AGYSPPRLRP PIVIVVLLIQ QNVGDHSTRL LLSERRFNLF LRTMDDGDID FTNPETYLCP AMGTDPHDSC
101: SISMDSYFDD FLKDTETEHL ACTHTHACCN SHVRHDLAHH TQTCIHVHTK ILREESDDVA ETSESPQETD GPKKKRPPGN RAAVRKYREK KKAHTTLLEE
201: EVARLKALNK QLLRRLQSHS ALEAEASRLR CLLVDIRGRI EGELGAFPYQ RPVKNNDSAD QGSFLGGGTQ QVRLTCNEPL YRSPEMQATT IDDDCGTSGE
301: LLGQAARDIA NNQWLPGLPD DVKR
101: SISMDSYFDD FLKDTETEHL ACTHTHACCN SHVRHDLAHH TQTCIHVHTK ILREESDDVA ETSESPQETD GPKKKRPPGN RAAVRKYREK KKAHTTLLEE
201: EVARLKALNK QLLRRLQSHS ALEAEASRLR CLLVDIRGRI EGELGAFPYQ RPVKNNDSAD QGSFLGGGTQ QVRLTCNEPL YRSPEMQATT IDDDCGTSGE
301: LLGQAARDIA NNQWLPGLPD DVKR
001: MEDGELDFSN QEVFSSSEMG ELPPSNCSMD SFFDGLLMDT NAACTHTHTC NPTGPENTHT HTCFHVHTKI LPDESDEKVS TDDTAESCGK KGEKRPLGNR
101: EAVRKYREKK KAKAASLEDE VARLRAVNQQ LVKRLQNQAT LEAEVSRLKC LLVDLRGRID GEIGSFPYQK PMAANIPSFS HMMNPCNVQC DDEVYCPQNV
201: FGVNSQEGAS INDQGLSGCD FDQLQCMANQ NLNGNGNGSF SNVNTSVSNK RKGGHRASRA V
101: EAVRKYREKK KAKAASLEDE VARLRAVNQQ LVKRLQNQAT LEAEVSRLKC LLVDLRGRID GEIGSFPYQK PMAANIPSFS HMMNPCNVQC DDEVYCPQNV
201: FGVNSQEGAS INDQGLSGCD FDQLQCMANQ NLNGNGNGSF SNVNTSVSNK RKGGHRASRA V
Arabidopsis Description
BZIP19Basic leucine zipper 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8VY76]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.