Factsheet for TraesCS3B01G360900.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

mitochondrion 1
endoplasmic reticulum 4
extracellular 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, secretory
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G330800.1	Wheat	nucleus	80.24	94.86
TraesCS3D01G324200.1	Wheat	nucleus	70.75	83.64
HORVU3Hr1G078550.1	Barley	nucleus	64.03	76.06
Os01t0801901-00	Rice	nucleus	47.43	53.57
GSMUA_Achr4P00320_001	Banana	nucleus	42.69	52.94
KXG33562	Sorghum	nucleus	43.08	50.23
TraesCS1B01G323600.1	Wheat	nucleus	43.87	48.47
GSMUA_Achr4P10150_001	Banana	nucleus	43.08	48.02
TraesCS7B01G448000.1	Wheat	nucleus	25.69	36.93
KRG89001	Soybean	nucleus	34.39	36.25
CDY23178	Canola	nucleus	26.48	35.64
TraesCS7B01G449200.1	Wheat	nucleus	27.27	33.82
CDY60641	Canola	nucleus	24.9	33.51
VIT_13s0158g00380.t01	Wine grape	nucleus	37.55	33.22
Bra033464.1-P	Field mustard	nucleus	26.09	32.51
TraesCS7B01G447900.1	Wheat	nucleus	32.41	32.16
TraesCS5B01G017700.1	Wheat	nucleus	32.81	31.32
Bra006886.1-P	Field mustard	extracellular	17.39	29.14
AT3G51960.2	Thale cress	nucleus	24.9	27.63
TraesCS7B01G321300.1	Wheat	nucleus	30.83	24.07

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.3	ncoils:Coil	GO:GO:0003674	GO:GO:0003700
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR004827	PFAM:PF07716	PFscan:PS50217	PANTHER:PTHR23334	PANTHER:PTHR23334:SF25	SMART:SM00338
SUPFAM:SSF57959	EnsemblPlantsGene:TraesCS3B01G360900	EnsemblPlants:TraesCS3B01G360900.1	InterPro:bZIP	TIGR:cd14686	SEG:seg

Description

No Description!

Coordinates

chr3B:+:572679174..572679935

Molecular Weight (calculated)

27399.6 Da

IEP (calculated)

6.033

GRAVY (calculated)

-0.049

Length

253 amino acids

Sequence
(BLAST)

001: MEQARVTSSR VFELFFGAFV RLPQLLIIGG ESSLLAHFVT MDDGLYLPIP NHLLFPYPEI SHGFDEFLAC THTHTCNGLS WSAAAHAHTC LHAHTQVIAS
101: GEDHAEHDQL RNLRKPLGNR EAVRKYRQKK KAHAAFLEEE VKKLRAANQQ LLRRLQGHAA LEAEVARLTG LLLDVRGKID AAEIGGLPFE ERCSFGSVVS
201: TAAEPTAPCF DSGSAEVPAA WEACEIDGGG IVSGELGVPE VVDAVASFVN SPA

Best Arabidopsis Sequence Match ( AT2G16770.1 )
(BLAST)

001: MDDGELEFSN SNMGGELPSC SMDSFFDELL RDSHACTHTH TCNPPGPENT HTHTCLHVHT KILPDKVSTD DTSESSGKKR PLGNREAVRK YREKKKAKAA
101: SLEDEVMRLK AVNNQLLKRL QGQAALEAEV TRLKCLLVDI RGRIDGEIGA FPYQKPAVTN VPYSYMMHPC NMQCDVDNLY CLQNGNNGEG ASMNEQGLNG
201: CEFDQLECLA NQNLAGKEIP VCSNGIGTFT VNGSGVNKRK GEPRAAKAV

Arabidopsis Description

BZIP23Basic leucine zipper 23 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTS2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.