Factsheet for VIT_13s0158g00380.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P00320_001	Banana	nucleus	42.66	59.8
KRG89001	Soybean	nucleus	43.36	51.67
EES19742	Sorghum	nucleus	38.46	50.69
GSMUA_Achr4P10150_001	Banana	nucleus	40.21	50.66
Os05t0495200-01	Rice	nucleus	38.46	49.11
Os01t0801901-00	Rice	nucleus	38.46	49.11
TraesCS1D01G312200.1	Wheat	nucleus	38.11	48.02
Zm00001d038574_P002	Maize	nucleus	37.76	47.16
TraesCS1B01G323600.1	Wheat	nucleus	37.76	47.16
HORVU0Hr1G000950.1	Barley	nucleus	37.06	47.11
HORVU1Hr1G067680.1	Barley	nucleus	36.71	46.67
CDY23178	Canola	nucleus	30.42	46.28
TraesCS1A01G311900.1	Wheat	nucleus	36.71	46.26
TraesCS3A01G330800.1	Wheat	nucleus	34.27	45.79
TraesCS3D01G324200.1	Wheat	nucleus	33.57	44.86
CDY60641	Canola	nucleus	29.37	44.68
HORVU3Hr1G078550.1	Barley	nucleus	33.22	44.6
Zm00001d010667_P001	Maize	nucleus	36.36	44.26
KXG33562	Sorghum	nucleus	33.22	43.78
Bra033464.1-P	Field mustard	nucleus	30.77	43.35
Bra006886.1-P	Field mustard	extracellular	20.98	39.74
TraesCS3B01G360900.1	Wheat	endoplasmic reticulum	33.22	37.55
AT3G51960.2	Thale cress	nucleus	29.72	37.28
VIT_03s0038g02420.t01	Wine grape	nucleus	34.97	36.9

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100255414	wikigene:100255414	MapMan:15.5.4.1	MapMan:15.5.4.3	EMBL:AM477563
ProteinID:CAN72907	ProteinID:CAN72907.1	ProteinID:CCB51834	ProteinID:CCB51834.1	UniProt:F6HHY8	EMBL:FN595762
GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	EntrezGene:LOC100255414	wikigene:LOC100255414	PFAM:PF07716
PANTHER:PTHR23334	PANTHER:PTHR23334:SF25	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0002108DAD	ArrayExpress:VIT_13s0158g00380
EnsemblPlantsGene:VIT_13s0158g00380	EnsemblPlants:VIT_13s0158g00380.t01	RefSeq:XP_003633543	RefSeq:XP_003633543.1	InterPro:bZIP	SEG:seg

Description

No Description!

Coordinates

chr13:-:21283084..21284766

Molecular Weight (calculated)

31756.7 Da

IEP (calculated)

6.499

GRAVY (calculated)

-0.462

Length

286 amino acids

Sequence
(BLAST)

001: MDDGEVELSD HVLLSNPNSS SNFQGSTPID SFLDDFLKNT RTCTHTHTCN PPGPDAAHTH TCYHTHTQVF ASEEDEVPNN KEHLISKVRR PSGNREAVRK
101: YREKKKAHTA YLEEEVKKLR LLNQQLVKKL QGQAVLEAEV LRLRSLLLDL RGKIDNELGV FPFQKQCNTT LSFKEGDCGL QSASGAIDPR CEMDLPCFHP
201: HVGSSSQASI SGSGKMVVSW EGNCQPAVVD CRGNINDMVS AEGHTMDTVE ALNYVLTEGI CNSDISVTAC MKPPMMKIKL FFSCFR

Best Arabidopsis Sequence Match ( AT2G16770.1 )
(BLAST)

001: MDDGELEFSN SNMGGELPSC SMDSFFDELL RDSHACTHTH TCNPPGPENT HTHTCLHVHT KILPDKVSTD DTSESSGKKR PLGNREAVRK YREKKKAKAA
101: SLEDEVMRLK AVNNQLLKRL QGQAALEAEV TRLKCLLVDI RGRIDGEIGA FPYQKPAVTN VPYSYMMHPC NMQCDVDNLY CLQNGNNGEG ASMNEQGLNG
201: CEFDQLECLA NQNLAGKEIP VCSNGIGTFT VNGSGVNKRK GEPRAAKAV

Arabidopsis Description

BZIP23Basic leucine zipper 23 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTS2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.