CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23178	Canola	nucleus	94.15	94.15
AT3G51960.2	Thale cress	nucleus	70.74	58.33
GSMUA_Achr4P00320_001	Banana	nucleus	40.43	37.25
EES19742	Sorghum	nucleus	40.43	35.02
Os01t0801901-00	Rice	nucleus	40.43	33.93
GSMUA_Achr4P10150_001	Banana	nucleus	40.96	33.92
KXG33562	Sorghum	nucleus	38.83	33.64
Zm00001d038574_P002	Maize	nucleus	40.96	33.62
CDY26786	Canola	nucleus	41.49	32.64
Os05t0495200-01	Rice	nucleus	38.83	32.59
KRG89001	Soybean	nucleus	41.49	32.5
HORVU0Hr1G000950.1	Barley	nucleus	38.83	32.44
TraesCS1B01G323600.1	Wheat	nucleus	39.36	32.31
CDY02237	Canola	nucleus	40.96	32.22
TraesCS1D01G312200.1	Wheat	nucleus	38.83	32.16
HORVU1Hr1G067680.1	Barley	nucleus	38.3	32.0
CDY47478	Canola	nucleus	40.96	31.95
CDX89748	Canola	nucleus	42.02	31.85
TraesCS3A01G330800.1	Wheat	nucleus	35.64	31.31
TraesCS1A01G311900.1	Wheat	nucleus	37.77	31.28
Zm00001d010667_P001	Maize	nucleus	38.3	30.64
TraesCS3D01G324200.1	Wheat	nucleus	33.51	29.44
CDY17503	Canola	nucleus	39.89	29.41
VIT_13s0158g00380.t01	Wine grape	nucleus	44.68	29.37
HORVU3Hr1G078550.1	Barley	nucleus	32.45	28.64
CDY52654	Canola	nucleus	35.64	28.15
CDX76308	Canola	nucleus	39.89	27.47
CDX69107	Canola	nucleus	37.77	26.2
TraesCS3B01G360900.1	Wheat	endoplasmic reticulum	33.51	24.9

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.3	GO:A0A078J7J5	UniProt:A0A078J7J5	EnsemblPlants:CDY60641
ProteinID:CDY60641	ProteinID:CDY60641.1	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00029882001	InterPro:IPR004827
PFAM:PF07716	PFscan:PS50217	PANTHER:PTHR23334	PANTHER:PTHR23334:SF25	SMART:SM00338	SUPFAM:SSF57959
UniParc:UPI0004EE1C23	InterPro:bZIP	SEG:seg	:	:	:

Description

BnaCnng36700DBnaCnng36700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J7J5]

Coordinates

chrLK033901:+:26366..27855

Molecular Weight (calculated)

21169.8 Da

IEP (calculated)

6.728

GRAVY (calculated)

-0.757

Length

188 amino acids

Sequence
(BLAST)

001: MDGEEVEAWA RASGGCSHTH SCNPPGPEDA SHSHTCFHTH THLIIPDSQE NGHSDSSNKR RSCGNREAVR KYREKKKART AYLEDEVQRL QSMNEFLLRK
101: LQSQAIVEAE IVRLRTLLVE MQGTMNDELG GFSFQKQCNG SGFVFKEDGC NVATRNMICE VARVECEEGK TLHEPVHSFV PHSPPFSR

Best Arabidopsis Sequence Match ( AT3G51960.1 )
(BLAST)

001: MFCCCKDCRG NQRVSNFDSL TGVFFGDLEF GPQNQRYIKM NEEEDKDQDR VTRGCSHTHS CNPPGPEDAS HSHTCFHAHT HLIISDQQEN DHSDSSNKKR
101: LCGNREAVRK YREKKKARTA YLEDEVMRLQ SLNEQFLRKL QSQEMVETEL IRLRALLVEM QGKIEVELCS FSFQKQCNGS GFVFKEDGCN LATSNMMCEA
201: ARVECEEGQT LHDPIQSFVP QPPPFSR

Arabidopsis Description

ATBZIP24Basic leucine zipper 24 [Source:UniProtKB/TrEMBL;Acc:F4J5N9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.