Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0801901-00 | Rice | nucleus | 64.98 | 62.95 |
| EES19742 | Sorghum | nucleus | 59.91 | 59.91 |
| GSMUA_Achr4P00320_001 | Banana | nucleus | 50.23 | 53.43 |
| GSMUA_Achr4P10150_001 | Banana | nucleus | 55.3 | 52.86 |
| TraesCS3A01G330800.1 | Wheat | nucleus | 51.61 | 52.34 |
| TraesCS3D01G324200.1 | Wheat | nucleus | 51.15 | 51.87 |
| HORVU3Hr1G078550.1 | Barley | nucleus | 49.31 | 50.23 |
| TraesCS3B01G360900.1 | Wheat | endoplasmic reticulum | 50.23 | 43.08 |
| CDY23178 | Canola | nucleus | 34.1 | 39.36 |
| CDY60641 | Canola | nucleus | 33.64 | 38.83 |
| KRG89001 | Soybean | nucleus | 40.55 | 36.67 |
| Bra033464.1-P | Field mustard | nucleus | 34.1 | 36.45 |
| VIT_13s0158g00380.t01 | Wine grape | nucleus | 43.78 | 33.22 |
| Bra006886.1-P | Field mustard | extracellular | 21.66 | 31.13 |
| EER90398 | Sorghum | nucleus | 38.71 | 30.77 |
| AT3G51960.2 | Thale cress | nucleus | 30.88 | 29.39 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | MapMan:15.5.4.3 | UniProt:A0A1B6Q6L6 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003700 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR004827 | EnsemblPlants:KXG33562 | ProteinID:KXG33562 | ProteinID:KXG33562.1 | ProteinID:KXG33563.1 |
| ProteinID:OQU87722.1 | PFAM:PF07716 | PFscan:PS50217 | PANTHER:PTHR23334 | PANTHER:PTHR23334:SF25 | SMART:SM00338 |
| EnsemblPlantsGene:SORBI_3003G327000 | SUPFAM:SSF57959 | UniParc:UPI0003C6461D | InterPro:bZIP | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr3:+:65278175..65282100
Molecular Weight (calculated)
24243.5 Da
IEP (calculated)
6.569
GRAVY (calculated)
-0.471
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDGVDLPSH HLHGYCFDDF MKSTAACTHT HTCNPPGPSA AMHTHRCLHT HRQFIASSSE ELRTPRKPLG NREAVRKYRE KKKAHAAFLE EEVKKLRATN
101: QHLLRRLQRH AALEAEVVRL RGLLFDVQGK IDAEIVGAFP FQKHRSFGSV ICTDPTLCFV NDDAEVAVPA REESSAPTNF SFEMDESDSI SREFDIPEVV
201: NSMDAAASLV NSASMAE
101: QHLLRRLQRH AALEAEVVRL RGLLFDVQGK IDAEIVGAFP FQKHRSFGSV ICTDPTLCFV NDDAEVAVPA REESSAPTNF SFEMDESDSI SREFDIPEVV
201: NSMDAAASLV NSASMAE
001: MDDGELEFSN SNMGGELPSC SMDSFFDELL RDSHACTHTH TCNPPGPENT HTHTCLHVHT KILPDKVSTD DTSESSGKKR PLGNREAVRK YREKKKAKAA
101: SLEDEVMRLK AVNNQLLKRL QGQAALEAEV TRLKCLLVDI RGRIDGEIGA FPYQKPAVTN VPYSYMMHPC NMQCDVDNLY CLQNGNNGEG ASMNEQGLNG
201: CEFDQLECLA NQNLAGKEIP VCSNGIGTFT VNGSGVNKRK GEPRAAKAV
101: SLEDEVMRLK AVNNQLLKRL QGQAALEAEV TRLKCLLVDI RGRIDGEIGA FPYQKPAVTN VPYSYMMHPC NMQCDVDNLY CLQNGNNGEG ASMNEQGLNG
201: CEFDQLECLA NQNLAGKEIP VCSNGIGTFT VNGSGVNKRK GEPRAAKAV
Arabidopsis Description
BZIP23Basic leucine zipper 23 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTS2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.