CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P00320_001	Banana	nucleus	45.0	52.94
EES19742	Sorghum	nucleus	39.58	43.78
CDY23178	Canola	nucleus	34.17	43.62
GSMUA_Achr4P10150_001	Banana	nucleus	41.25	43.61
TraesCS1D01G312200.1	Wheat	nucleus	41.25	43.61
VIT_13s0158g00380.t01	Wine grape	nucleus	51.67	43.36
TraesCS1B01G323600.1	Wheat	nucleus	41.25	43.23
HORVU1Hr1G067680.1	Barley	nucleus	40.42	43.11
TraesCS1A01G311900.1	Wheat	nucleus	40.42	42.73
HORVU0Hr1G000950.1	Barley	nucleus	40.0	42.67
Os05t0495200-01	Rice	nucleus	39.58	42.41
TraesCS3A01G330800.1	Wheat	nucleus	37.5	42.06
Os01t0801901-00	Rice	nucleus	39.17	41.96
Zm00001d010667_P001	Maize	nucleus	40.83	41.7
CDY60641	Canola	nucleus	32.5	41.49
Zm00001d038574_P002	Maize	nucleus	39.58	41.48
TraesCS3D01G324200.1	Wheat	nucleus	36.67	41.12
Bra033464.1-P	Field mustard	nucleus	34.58	40.89
KXG33562	Sorghum	nucleus	36.67	40.55
HORVU3Hr1G078550.1	Barley	nucleus	35.42	39.91
AT3G51960.2	Thale cress	nucleus	32.92	34.65
TraesCS3B01G360900.1	Wheat	endoplasmic reticulum	36.25	34.39
Bra006886.1-P	Field mustard	extracellular	21.25	33.77
KRH29295	Soybean	nucleus	36.67	32.59
KRH24316	Soybean	nucleus	36.67	32.47

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.3	ncoils:Coil	EnsemblPlantsGene:GLYMA_U018600	GO:GO:0003674
GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	UniProt:I1LKF3	InterPro:IPR004827	EnsemblPlants:KRG89001	ProteinID:KRG89001	ProteinID:KRG89001.1
ProteinID:KRG89002.1	ProteinID:KRG89003.1	ProteinID:KRG89004.1	PFAM:PF07716	PFscan:PS50217	PANTHER:PTHR23334
PANTHER:PTHR23334:SF25	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI00023CC05E	InterPro:bZIP	SEG:seg

Description

hypothetical protein

Coordinates

chrscaffold_21:+:3148443..3150426

Molecular Weight (calculated)

26570.0 Da

IEP (calculated)

7.056

GRAVY (calculated)

-0.778

Length

240 amino acids

Sequence
(BLAST)

001: MDDGNAELSD KLSDNNVLFL NPESCSSFQA SSSSRTCTHT HTCNPPGPDA AHTHTCYHTH TQVFAPEDDG RKHSNSKQKR PSGNREAVRK YREKKKAHTA
101: YLEEEVKKLH MVNQQLVRKL QGQALLEAEL ARLRSILARL KGKIDSELGA WPFQKQYCNT SYIFKEGDAG LECQKNNLPC FHPHVGSSSQ VNICACGKSM
201: IPLDGNCQPE MVDCQVDANN MTSTEGQTVD NIMSSASQDG

Best Arabidopsis Sequence Match ( AT2G16770.1 )
(BLAST)

001: MDDGELEFSN SNMGGELPSC SMDSFFDELL RDSHACTHTH TCNPPGPENT HTHTCLHVHT KILPDKVSTD DTSESSGKKR PLGNREAVRK YREKKKAKAA
101: SLEDEVMRLK AVNNQLLKRL QGQAALEAEV TRLKCLLVDI RGRIDGEIGA FPYQKPAVTN VPYSYMMHPC NMQCDVDNLY CLQNGNNGEG ASMNEQGLNG
201: CEFDQLECLA NQNLAGKEIP VCSNGIGTFT VNGSGVNKRK GEPRAAKAV

Arabidopsis Description

BZIP23Basic leucine zipper 23 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTS2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.