Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G025800.1 | Wheat | nucleus | 91.7 | 91.35 |
| TraesCS5A01G020700.1 | Wheat | nucleus | 92.83 | 83.96 |
| HORVU5Hr1G005780.2 | Barley | nucleus | 84.53 | 83.27 |
| Os06t0716800-01 | Rice | nucleus | 75.47 | 73.53 |
| EER90398 | Sorghum | nucleus | 70.57 | 68.5 |
| Zm00001d014795_P001 | Maize | nucleus | 68.68 | 65.94 |
| TraesCS7B01G447900.1 | Wheat | nucleus | 61.89 | 64.31 |
| Zm00001d036400_P001 | Maize | nucleus | 43.02 | 62.98 |
| TraesCS7B01G448000.1 | Wheat | nucleus | 40.0 | 60.23 |
| GSMUA_Achr3P00670_001 | Banana | nucleus | 57.36 | 55.27 |
| TraesCS7B01G449200.1 | Wheat | nucleus | 41.13 | 53.43 |
| GSMUA_Achr1P14830_001 | Banana | nucleus | 55.09 | 53.09 |
| VIT_03s0038g02420.t01 | Wine grape | nucleus | 49.81 | 48.71 |
| Solyc01g111580.2.1 | Tomato | nucleus | 48.3 | 47.41 |
| Bra037290.1-P | Field mustard | nucleus | 42.64 | 47.28 |
| CDY26786 | Canola | nucleus | 42.26 | 46.86 |
| PGSC0003DMT400015830 | Potato | nucleus | 47.92 | 46.69 |
| AT2G16770.1 | Thale cress | nucleus | 43.77 | 46.59 |
| CDY47478 | Canola | nucleus | 42.26 | 46.47 |
| CDY02237 | Canola | nucleus | 41.89 | 46.44 |
| Bra013048.1-P | Field mustard | nucleus | 41.51 | 46.03 |
| AT4G35040.2 | Thale cress | nucleus | 44.91 | 45.59 |
| Bra011580.1-P | Field mustard | nucleus | 39.25 | 45.02 |
| CDX89748 | Canola | nucleus | 41.89 | 44.76 |
| KRH24316 | Soybean | nucleus | 44.91 | 43.91 |
| CDY52654 | Canola | nucleus | 39.25 | 43.7 |
| KRH29295 | Soybean | nucleus | 44.15 | 43.33 |
| Bra034668.1-P | Field mustard | nucleus | 41.51 | 43.14 |
| CDY17503 | Canola | nucleus | 41.51 | 43.14 |
| PGSC0003DMT400031184 | Potato | nucleus | 41.51 | 42.47 |
| GSMUA_Achr7P03840_001 | Banana | golgi, mitochondrion, nucleus, plastid | 51.32 | 40.96 |
| CDX76308 | Canola | nucleus | 41.51 | 40.29 |
| TraesCS1B01G323600.1 | Wheat | nucleus | 34.72 | 40.17 |
| CDX69107 | Canola | nucleus | 40.75 | 39.85 |
| TraesCS7B01G321300.1 | Wheat | nucleus | 48.68 | 39.81 |
| Solyc10g055550.1.1 | Tomato | plasma membrane | 41.13 | 35.86 |
| TraesCS3B01G360900.1 | Wheat | endoplasmic reticulum | 31.32 | 32.81 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | MapMan:15.5.4.3 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR004827 | PFAM:PF07716 | PFscan:PS50217 | PANTHER:PTHR23334 | PANTHER:PTHR23334:SF25 | SMART:SM00338 |
| SUPFAM:SSF57959 | EnsemblPlantsGene:TraesCS5B01G017700 | EnsemblPlants:TraesCS5B01G017700.1 | InterPro:bZIP | TIGR:cd14686 | SEG:seg |
Description
No Description!
Coordinates
chr5B:+:16419933..16420730
Molecular Weight (calculated)
28100.1 Da
IEP (calculated)
6.224
GRAVY (calculated)
-0.448
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDGDLDFSN PEAYLCSDTG AGCSMDSYFD GILNDAEHLA CTHTHTCNPP VDDSSHTHTC VHVHTKIVSA SSDGGAADSP AENSGASKKR RPSGNRAAVR
101: KYREKKKAHT ALLEEEVVQL KALNKQLLKK LQNHAALEAE AARLRCLLVD VRGRIDGEIG AFPYQRPVKN VDLVSGVDQG GFLGSAQVMN SCDFRCNDQM
201: YCNPGMQMRT IGDDGAMSGQ VFGQGTGDIA NIQCMGGAKS GLTMPPGCGG MGTMPSGCLP SSEKQ
101: KYREKKKAHT ALLEEEVVQL KALNKQLLKK LQNHAALEAE AARLRCLLVD VRGRIDGEIG AFPYQRPVKN VDLVSGVDQG GFLGSAQVMN SCDFRCNDQM
201: YCNPGMQMRT IGDDGAMSGQ VFGQGTGDIA NIQCMGGAKS GLTMPPGCGG MGTMPSGCLP SSEKQ
001: MEDGELDFSN QEVFSSSEMG ELPPSNCSMD SFFDGLLMDT NAACTHTHTC NPTGPENTHT HTCFHVHTKI LPDESDEKVS TDDTAESCGK KGEKRPLGNR
101: EAVRKYREKK KAKAASLEDE VARLRAVNQQ LVKRLQNQAT LEAEVSRLKC LLVDLRGRID GEIGSFPYQK PMAANIPSFS HMMNPCNVQC DDEVYCPQNV
201: FGVNSQEGAS INDQGLSGCD FDQLQCMANQ NLNGNGNGSF SNVNTSVSNK RKGGHRASRA V
101: EAVRKYREKK KAKAASLEDE VARLRAVNQQ LVKRLQNQAT LEAEVSRLKC LLVDLRGRID GEIGSFPYQK PMAANIPSFS HMMNPCNVQC DDEVYCPQNV
201: FGVNSQEGAS INDQGLSGCD FDQLQCMANQ NLNGNGNGSF SNVNTSVSNK RKGGHRASRA V
Arabidopsis Description
BZIP19Basic leucine zipper 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8VY76]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.