Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G557500.2 | Wheat | nucleus | 95.5 | 95.5 |
| TraesCS4A01G321300.1 | Wheat | nucleus | 91.87 | 93.32 |
| HORVU5Hr1G124010.1 | Barley | nucleus | 88.75 | 88.6 |
| HORVU0Hr1G014460.1 | Barley | nucleus | 67.82 | 67.94 |
| Os03t0854800-03 | Rice | nucleus | 53.98 | 53.42 |
| EER90487 | Sorghum | nucleus | 51.04 | 51.48 |
| Zm00001d012821_P003 | Maize | extracellular, vacuole | 51.38 | 45.27 |
| GSMUA_Achr11P... | Banana | nucleus | 40.66 | 45.19 |
| GSMUA_Achr8P14660_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 39.62 | 41.64 |
| GSMUA_Achr5P14120_001 | Banana | nucleus | 40.66 | 41.52 |
| GSMUA_Achr2P18060_001 | Banana | nucleus | 41.0 | 41.22 |
| GSMUA_Achr4P19000_001 | Banana | nucleus | 28.89 | 39.86 |
| TraesCS1D01G199200.1 | Wheat | cytosol, nucleus, plastid | 38.06 | 37.16 |
| CDY60257 | Canola | cytosol | 18.86 | 33.33 |
| Solyc08g005270.2.1 | Tomato | nucleus | 33.56 | 32.33 |
| VIT_02s0012g01920.t01 | Wine grape | cytosol | 28.89 | 31.33 |
| VIT_02s0012g01930.t01 | Wine grape | nucleus | 33.22 | 30.82 |
| Bra023252.1-P | Field mustard | nucleus | 24.57 | 29.46 |
| PGSC0003DMT400038368 | Potato | nucleus | 29.93 | 29.37 |
| KRH39574 | Soybean | mitochondrion, nucleus, plastid | 29.41 | 29.16 |
| Bra017317.1-P | Field mustard | nucleus | 26.64 | 29.06 |
| Bra005336.1-P | Field mustard | cytosol, nucleus, plastid | 26.12 | 28.82 |
| Solyc08g076420.2.1 | Tomato | nucleus | 29.76 | 28.81 |
| CDX84199 | Canola | cytosol, nucleus, plastid | 24.57 | 28.8 |
| CDY67026 | Canola | nucleus | 27.34 | 28.73 |
| CDY22597 | Canola | nucleus | 26.99 | 28.68 |
| KRH74370 | Soybean | mitochondrion, nucleus, plastid | 28.89 | 28.64 |
| CDY31694 | Canola | nucleus | 25.95 | 28.41 |
| CDY32124 | Canola | nucleus | 25.95 | 28.3 |
| CDY43007 | Canola | nucleus | 27.51 | 27.37 |
| AT1G32230.1 | Thale cress | nucleus | 27.68 | 27.16 |
| Solyc06g066330.2.1 | Tomato | nucleus | 27.51 | 26.77 |
| Bra035511.1-P | Field mustard | cytosol | 25.78 | 26.7 |
| PGSC0003DMT400043197 | Potato | nucleus | 27.34 | 26.6 |
| AT2G35510.3 | Thale cress | cytosol | 26.12 | 26.58 |
| TraesCS4D01G236400.2 | Wheat | nucleus | 18.86 | 24.83 |
| CDY41739 | Canola | cytosol | 23.18 | 24.36 |
| KRH74373 | Soybean | mitochondrion | 16.61 | 20.13 |
| TraesCS7D01G402500.1 | Wheat | nucleus | 22.32 | 14.78 |
| TraesCS7D01G201500.1 | Wheat | nucleus | 20.59 | 13.49 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G551800.3 | EnsemblPlantsGene:TraesCS5D01G551800 | Gene3D:3.90.228.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003950 |
| GO:GO:0016740 | InterPro:IPR012317 | InterPro:Poly(ADP-ribose)pol_cat_dom | InterPro:RST | PANTHER:PTHR32263 | PANTHER:PTHR32263:SF4 |
| PFAM:PF12174 | PFscan:PS51059 | SEG:seg | SUPFAM:SSF56399 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr5D:+:557532432..557535140
Molecular Weight (calculated)
63627.3 Da
IEP (calculated)
8.348
GRAVY (calculated)
-0.394
Length
578 amino acids
Sequence
(BLAST)
(BLAST)
001: MERKSGMILD EHVLKANDRK RKHESSVKST GTDYFAEVSQ HADGSAVLKK SKMTSSAGDI LECYKNFKTS GLPMRVLCYH QGKWRDFPEH VVNLVQQDFQ
101: LKRPITNAVL KNQQVLLDFM HMVCIDSSMT TNKPIAWIDV HGNRFFPELC AGLVASKPSQ HGKSDPSGKS EAGECAGNLI LTAGAESSSS DSVDAVLPHA
201: KKVNNILEEE HEVHNYAAVE NKAGPAICLD EPASGNIHAA TCKQKIGQPV DSAVRKLLLE GAGQPFSEEN IIGIYRTPLV DQHGRARFNL FQKELEATKM
301: RRGNANVRYA WLPCSKDTME EMMMRGVLEV TKPMLGPMYG IGTHLAPANC AKTCASYSDI DENGIMRMML CRVIMGNVEV VLPGSKQFQP TNGTFDSGVD
401: DLQKPKHYVI WDANVHRHIY AEYAVVIKAP SMTNEYLAGE DTASNVSEIR NSGSAESVIK DDSSETLASP ADKQQAPRFG RAPTRRPPTS PWMPLPMLFA
501: AISTKVPRSD MDVIHGHYEE FKRRKISRPE FVRRLRQIVG DKLLVSTVVR LQPKVVAPMA GAEVLPRGAP GTGGSSTS
101: LKRPITNAVL KNQQVLLDFM HMVCIDSSMT TNKPIAWIDV HGNRFFPELC AGLVASKPSQ HGKSDPSGKS EAGECAGNLI LTAGAESSSS DSVDAVLPHA
201: KKVNNILEEE HEVHNYAAVE NKAGPAICLD EPASGNIHAA TCKQKIGQPV DSAVRKLLLE GAGQPFSEEN IIGIYRTPLV DQHGRARFNL FQKELEATKM
301: RRGNANVRYA WLPCSKDTME EMMMRGVLEV TKPMLGPMYG IGTHLAPANC AKTCASYSDI DENGIMRMML CRVIMGNVEV VLPGSKQFQP TNGTFDSGVD
401: DLQKPKHYVI WDANVHRHIY AEYAVVIKAP SMTNEYLAGE DTASNVSEIR NSGSAESVIK DDSSETLASP ADKQQAPRFG RAPTRRPPTS PWMPLPMLFA
501: AISTKVPRSD MDVIHGHYEE FKRRKISRPE FVRRLRQIVG DKLLVSTVVR LQPKVVAPMA GAEVLPRGAP GTGGSSTS
001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNGARGSG SANSVGSSTT
501: RPKSPWMPFP TLFAAISHKV AENDMLLINA DYQQLRDKKM TRAEFVRKLR VIVGDDLLRS TITTLQNQVR
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNGARGSG SANSVGSSTT
501: RPKSPWMPFP TLFAAISHKV AENDMLLINA DYQQLRDKKM TRAEFVRKLR VIVGDDLLRS TITTLQNQVR
Arabidopsis Description
RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.