Factsheet for TraesCS2A01G101000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G195400.4
TraesCS1B01G210300.4
TraesCS1D01G199200.1
TraesCS4A01G321300.1
TraesCS5B01G557500.2
TraesCS5D01G551800.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04060.1	TraesCS1A01G195400.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1B01G210300.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1D01G199200.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS4A01G321300.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS5B01G557500.2	AT1G32230.1	19548978
AT3G04060.1	TraesCS5D01G551800.3	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G101100.1	Wheat	cytosol, nucleus, plastid	88.48	97.13
TraesCS2D01G100600.1	Wheat	cytosol, nucleus, plastid	82.72	85.87
TraesCS2A01G101400.1	Wheat	cytosol	74.35	80.45
TraesCS2A01G101200.1	Wheat	nucleus	55.5	76.81
TraesCS2D01G100700.1	Wheat	cytosol, endoplasmic reticulum, nucleus	84.82	75.88
HORVU2Hr1G017350.1	Barley	nucleus	78.01	75.06
HORVU2Hr1G017360.1	Barley	nucleus	29.32	73.68
HORVU2Hr1G017370.1	Barley	cytosol, nucleus, plastid	74.87	67.29
EER97754	Sorghum	nucleus	52.36	60.06
Os07t0684800-01	Rice	cytosol	47.12	59.8
CDY29982	Canola	cytosol	26.7	59.3
Zm00001d022517_P001	Maize	nucleus	47.91	57.55
GSMUA_Achr10P...	Banana	cytosol	31.41	52.63
TraesCS4A01G130600.1	Wheat	nucleus	46.34	51.75
GSMUA_Achr5P07600_001	Banana	cytosol	32.46	50.41
TraesCS3A01G077900.1	Wheat	nucleus	26.7	47.66
GSMUA_Achr3P18020_001	Banana	nucleus	35.86	46.76
GSMUA_Achr9P16920_001	Banana	cytosol	33.77	42.16
GSMUA_Achr6P32290_001	Banana	nucleus	36.91	40.75
GSMUA_Achr7P18330_001	Banana	nucleus	32.72	40.58
GSMUA_Achr3P09520_001	Banana	cytosol	33.51	40.25
CDY53250	Canola	nucleus	35.08	39.88
TraesCS4A01G242700.1	Wheat	cytosol, mitochondrion, nucleus	31.15	39.8
CDY02636	Canola	nucleus	35.08	39.76
Bra023669.1-P	Field mustard	nucleus	34.82	39.58
GSMUA_Achr6P08600_001	Banana	nucleus	35.86	39.48
Bra006449.1-P	Field mustard	nucleus	34.55	39.29
Bra002148.1-P	Field mustard	nucleus	34.55	39.29
CDX70804	Canola	nucleus	34.55	39.17
CDY51238	Canola	nucleus	34.55	39.17
AT5G18270.1	Thale cress	nucleus	34.29	39.1
AT3G04060.1	Thale cress	nucleus	34.29	38.76
Bra040153.1-P	Field mustard	nucleus	33.25	37.03
KRG94783	Soybean	nucleus	39.01	36.79
CDY50879	Canola	cytoskeleton, cytosol, nucleus	32.98	36.73
KRH06738	Soybean	nucleus	39.01	36.61
Bra031950.1-P	Field mustard	cytoskeleton, cytosol, nucleus	32.72	36.34
CDY42901	Canola	nucleus	32.72	36.34
KRH08479	Soybean	nucleus	37.7	35.12
KRH70130	Soybean	nucleus	37.7	35.12
VIT_08s0007g07640.t01	Wine grape	nucleus	36.65	34.74
TraesCS7A01G305200.1	Wheat	cytosol	25.92	34.26
TraesCS5A01G245900.2	Wheat	nucleus	29.32	34.15
TraesCS7A01G464800.1	Wheat	nucleus	27.49	34.09
TraesCS5A01G049100.2	Wheat	cytosol, nucleus, peroxisome	27.23	33.99
TraesCS7A01G464100.1	Wheat	nucleus	26.96	33.55
TraesCS2A01G338300.1	Wheat	nucleus	31.15	33.52
TraesCS7A01G189200.1	Wheat	nucleus	29.84	32.66
TraesCS7A01G194700.1	Wheat	nucleus	29.84	32.66
TraesCS7A01G569300.1	Wheat	cytosol	30.89	32.6
TraesCS7A01G152500.1	Wheat	nucleus	30.37	32.58
TraesCS5A01G275900.1	Wheat	nucleus	30.89	32.15
TraesCS7A01G334800.1	Wheat	nucleus	30.1	31.68
TraesCS7A01G569100.1	Wheat	nucleus	31.15	31.32
TraesCS2A01G382400.1	Wheat	nucleus	25.39	31.29
TraesCS7A01G247600.1	Wheat	extracellular	27.49	31.16
TraesCS6A01G378600.1	Wheat	nucleus	23.82	29.74
TraesCS5A01G143100.1	Wheat	nucleus	31.15	29.53
TraesCS2A01G462500.1	Wheat	plastid	25.13	28.66
TraesCS6A01G378500.1	Wheat	nucleus	23.3	28.62
GSMUA_Achr8P21470_001	Banana	nucleus	36.39	26.94

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005
PANTHER:PTHR31744	PANTHER:PTHR31744:SF47	SUPFAM:SSF101941	EnsemblPlantsGene:TraesCS2A01G101000	EnsemblPlants:TraesCS2A01G101000.1	SEG:seg

Description

No Description!

Coordinates

chr2A:+:54012213..54013771

Molecular Weight (calculated)

42413.5 Da

IEP (calculated)

5.071

GRAVY (calculated)

-0.369

Length

382 amino acids

Sequence
(BLAST)

001: MSDVTAVMDL EVEELKLALP PGFRFHPTDE EVVTHYLTRK VLRESFSCQV IADVDLNKTE PWDLPGEYYY SLLDRSVRLI RFAARSWPAV RFAGKAKMGE
101: KEWFFFVHKG RKYPTGTRTN RATEKGYWKA TGKDKEIFRG KGRDAVLVGM KKTLVFYTGR APSGGKTPWV MHEYRLEGEL PHRLPRTAKD DWAVCRVFNK
201: DLAAKNAPQM APAAGGAMED PLAFLDDLLI DTDLNLFDDA DLPMLMDSPS GADDFAGASS STSSAALPLE PDAEHLTIKM EPPPQQQQQM QSPDYFMPAT
301: ANGNLGGAGY STYQAVVDQQ AAIRMYCKPK AEVASSSALG LDMGALAGAD TSFLMPSSRS CLDLEELFRG EALMDYSDMW KI

Best Arabidopsis Sequence Match ( AT5G07680.1 )
(BLAST)

001: METFGVFHKE DDEQMDLPPG FRFHPTDEEL ITHYLHKKVL DLGFSAKAIG EVDLNKAEPW ELPYKAKIGE KEWYFFCVRD RKYPTGLRTN RATQAGYWKA
101: TGKDKEIFRG KSLVGMKKTL VFYRGRAPKG QKTNWVMHEY RLDGKLSAHN LPKTAKNEWV ICRVFHKTAG GKKIPISTLI RIGSYGTGSS LPPLTDSSPY
201: NDKTKTEPVY VPCFSNQAET RGTILNCFSN PSLSSIQPDF LQMIPLYQPQ SLNISESSNP VLTQEQSVLQ AMMENNRRQN FKTLSISQET GVSNTDNSSV
301: FEFGRKRFDH QEVPSPSSGP VDLEPFWNY

Arabidopsis Description

NAC079NAC4 [Source:UniProtKB/TrEMBL;Acc:A0A178UL34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.