Factsheet for TraesCS2D01G100700.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, nucleus
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G195400.4
TraesCS1B01G210300.4
TraesCS1D01G199200.1
TraesCS4A01G321300.1
TraesCS5B01G557500.2
TraesCS5D01G551800.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04060.1	TraesCS1A01G195400.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1B01G210300.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1D01G199200.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS4A01G321300.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS5B01G557500.2	AT1G32230.1	19548978
AT3G04060.1	TraesCS5D01G551800.3	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G100600.1	Wheat	cytosol, nucleus, plastid	79.86	92.66
TraesCS2A01G101000.1	Wheat	cytosol, nucleus, plastid	75.88	84.82
TraesCS2D01G100900.1	Wheat	nucleus	68.15	82.44
TraesCS2D01G100800.1	Wheat	nucleus	50.59	78.26
HORVU2Hr1G017350.1	Barley	nucleus	69.79	75.06
HORVU2Hr1G017370.1	Barley	cytosol, nucleus, plastid	74.0	74.35
HORVU2Hr1G017360.1	Barley	nucleus	24.59	69.08
Zm00001d022517_P001	Maize	nucleus	44.73	60.06
EER97754	Sorghum	nucleus	46.84	60.06
CDY29982	Canola	cytosol	23.89	59.3
Os07t0684800-01	Rice	cytosol	41.45	58.8
TraesCS4D01G176000.1	Wheat	nucleus	42.86	53.51
GSMUA_Achr10P...	Banana	cytosol	27.63	51.75
GSMUA_Achr5P07600_001	Banana	cytosol	28.81	50.0
TraesCS3D01G078500.1	Wheat	nucleus	24.12	45.78
GSMUA_Achr3P18020_001	Banana	nucleus	31.38	45.73
GSMUA_Achr9P16920_001	Banana	cytosol	29.74	41.5
GSMUA_Achr7P18330_001	Banana	nucleus	29.51	40.91
CDY53250	Canola	nucleus	31.62	40.18
GSMUA_Achr6P32290_001	Banana	nucleus	32.55	40.17
CDY02636	Canola	nucleus	31.62	40.06
GSMUA_Achr6P08600_001	Banana	nucleus	32.55	40.06
Bra023669.1-P	Field mustard	nucleus	31.38	39.88
Bra006449.1-P	Field mustard	nucleus	31.38	39.88
CDY51238	Canola	nucleus	31.38	39.76
CDX70804	Canola	nucleus	31.38	39.76
GSMUA_Achr3P09520_001	Banana	cytosol	29.51	39.62
Bra002148.1-P	Field mustard	nucleus	31.15	39.58
AT5G18270.1	Thale cress	nucleus	30.91	39.4
AT3G04060.1	Thale cress	nucleus	31.15	39.35
TraesCS4D01G071200.1	Wheat	cytosol, mitochondrion, nucleus	26.93	38.46
Bra040153.1-P	Field mustard	nucleus	30.21	37.61
CDY50879	Canola	cytoskeleton, cytosol, nucleus	29.74	37.03
CDY42901	Canola	nucleus	29.74	36.92
Bra031950.1-P	Field mustard	cytoskeleton, cytosol, nucleus	29.51	36.63
KRG94783	Soybean	nucleus	34.43	36.3
KRH06738	Soybean	nucleus	34.43	36.12
VIT_08s0007g07640.t01	Wine grape	nucleus	33.02	34.99
KRH08479	Soybean	nucleus	33.49	34.88
TraesCS5D01G059700.2	Wheat	cytosol, nucleus, peroxisome	24.59	34.65
KRH70130	Soybean	nucleus	33.02	34.39
TraesCS7D01G302000.1	Wheat	cytosol	23.42	34.36
TraesCS7D01G452500.1	Wheat	nucleus	24.59	34.09
TraesCS2D01G324700.1	Wheat	nucleus	28.1	33.99
TraesCS7D01G451700.1	Wheat	nucleus	24.36	33.33
TraesCS7D01G196300.1	Wheat	cytosol, nucleus, peroxisome	27.17	33.24
TraesCS7D01G543400.1	Wheat	nucleus	26.23	32.94
TraesCS7D01G189900.1	Wheat	nucleus	24.82	32.82
TraesCS7D01G154200.1	Wheat	nucleus	27.17	32.58
TraesCS2D01G462900.1	Wheat	cytosol, nucleus, plastid	22.25	32.53
TraesCS5D01G283200.1	Wheat	mitochondrion, nucleus, plastid	26.46	31.04
TraesCS7D01G543500.2	Wheat	endoplasmic reticulum	27.4	30.79
TraesCS7D01G342300.1	Wheat	nucleus	26.0	30.66
TraesCS7D01G246100.1	Wheat	cytosol	23.89	30.45
TraesCS6D01G362900.1	Wheat	nucleus	21.08	29.7
TraesCS2D01G378800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	21.78	29.52
TraesCS5D01G148900.1	Wheat	nucleus	27.63	29.35
TraesCS6D01G362800.1	Wheat	nucleus	20.84	28.53
GSMUA_Achr8P21470_001	Banana	nucleus	32.08	26.55

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005
PANTHER:PTHR31744	PANTHER:PTHR31744:SF47	SUPFAM:SSF101941	EnsemblPlantsGene:TraesCS2D01G100700	EnsemblPlants:TraesCS2D01G100700.1	SEG:seg

Description

No Description!

Coordinates

chr2D:+:52852026..52853393

Molecular Weight (calculated)

47544.6 Da

IEP (calculated)

6.708

GRAVY (calculated)

-0.405

Length

427 amino acids

Sequence
(BLAST)

001: MSDVTAVMDL EVGEPQLALP PGFRFHPTDE EVVTHYLTRK VLRESFSCQV IADVDLNKTE PWDLPGKAKM GEKEWFFFVH KGRKYPTGTR TNRATEKGYW
101: KATGKDKEIF RGKGRDAVLV GMKKTLVFYT GRAPSGGKTP WVMHEYRLEG ELPHRLPRTA KVRLARFDCP RLRVDRSNRR SIRRCCWPGP RAHMSRSRFA
201: SCFLFFSCSF LNLPFACVQD DWAVCRVINK DLAARNALQM APAAGGGMED PLAFLHDLLN NDDLLNNADL LDNASLLDNA DLPMLMDSPS GADDFAGASS
301: STSSAALPLE PDTEHLTVKT EPSPQQQQQM LSPDYFMPAT ANGYLGGDGY SPYQAMGDQQ AAIRRYCRPK AEVASSSALL SPSLGLDTAA LAGADTSFLM
401: PSSRSYLDLE ELFRGEPLMD YSDMWKI

Best Arabidopsis Sequence Match ( AT5G07680.1 )
(BLAST)

001: METFGVFHKE DDEQMDLPPG FRFHPTDEEL ITHYLHKKVL DLGFSAKAIG EVDLNKAEPW ELPYKAKIGE KEWYFFCVRD RKYPTGLRTN RATQAGYWKA
101: TGKDKEIFRG KSLVGMKKTL VFYRGRAPKG QKTNWVMHEY RLDGKLSAHN LPKTAKNEWV ICRVFHKTAG GKKIPISTLI RIGSYGTGSS LPPLTDSSPY
201: NDKTKTEPVY VPCFSNQAET RGTILNCFSN PSLSSIQPDF LQMIPLYQPQ SLNISESSNP VLTQEQSVLQ AMMENNRRQN FKTLSISQET GVSNTDNSSV
301: FEFGRKRFDH QEVPSPSSGP VDLEPFWNY

Arabidopsis Description

NAC079NAC4 [Source:UniProtKB/TrEMBL;Acc:A0A178UL34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.