Factsheet for TraesCS2D01G100800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G195400.4
TraesCS1B01G210300.4
TraesCS1D01G199200.1
TraesCS4A01G321300.1
TraesCS5B01G557500.2
TraesCS5D01G551800.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04060.1	TraesCS1A01G195400.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1B01G210300.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1D01G199200.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS4A01G321300.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS5B01G557500.2	AT1G32230.1	19548978
AT3G04060.1	TraesCS5D01G551800.3	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G101200.1	Wheat	nucleus	92.39	92.39
HORVU2Hr1G017380.1	Barley	cytosol, nucleus, plastid	71.74	84.26
TraesCS2D01G100900.1	Wheat	nucleus	76.09	59.49
TraesCS2D01G100600.1	Wheat	cytosol, nucleus, plastid	77.9	58.42
CDY29982	Canola	cytosol	35.87	57.56
TraesCS2D01G100700.1	Wheat	cytosol, endoplasmic reticulum, nucleus	78.26	50.59
Os07t0684800-01	Rice	cytosol	55.07	50.5
GSMUA_Achr10P...	Banana	cytosol	40.94	49.56
EER97754	Sorghum	nucleus	59.78	49.55
GSMUA_Achr5P07600_001	Banana	cytosol	43.12	48.37
Zm00001d022517_P001	Maize	nucleus	55.43	48.11
TraesCS3D01G078500.1	Wheat	nucleus	35.51	43.56
TraesCS4D01G176000.1	Wheat	nucleus	53.62	43.27
GSMUA_Achr3P18020_001	Banana	nucleus	43.48	40.96
GSMUA_Achr9P16920_001	Banana	cytosol	42.39	38.24
GSMUA_Achr3P09520_001	Banana	cytosol	42.03	36.48
GSMUA_Achr7P18330_001	Banana	nucleus	40.58	36.36
GSMUA_Achr6P32290_001	Banana	nucleus	45.29	36.13
TraesCS4D01G071200.1	Wheat	cytosol, mitochondrion, nucleus	38.41	35.45
CDY53250	Canola	nucleus	42.75	35.12
CDY02636	Canola	nucleus	42.75	35.01
AT5G18270.1	Thale cress	nucleus	42.39	34.93
GSMUA_Achr6P08600_001	Banana	nucleus	43.84	34.87
Bra023669.1-P	Field mustard	nucleus	42.39	34.82
AT3G04060.1	Thale cress	nucleus	42.03	34.32
Bra002148.1-P	Field mustard	nucleus	41.67	34.23
Bra006449.1-P	Field mustard	nucleus	41.3	33.93
CDX70804	Canola	nucleus	41.3	33.83
CDY51238	Canola	nucleus	41.3	33.83
CDY50879	Canola	cytoskeleton, cytosol, nucleus	41.67	33.53
Bra040153.1-P	Field mustard	nucleus	41.67	33.53
CDY42901	Canola	nucleus	41.3	33.14
Bra031950.1-P	Field mustard	cytoskeleton, cytosol, nucleus	41.3	33.14
KRG94783	Soybean	nucleus	47.1	32.1
TraesCS7D01G302000.1	Wheat	cytosol	33.7	31.96
TraesCS5D01G059700.2	Wheat	cytosol, nucleus, peroxisome	34.78	31.68
KRH06738	Soybean	nucleus	46.01	31.2
TraesCS2D01G462900.1	Wheat	cytosol, nucleus, plastid	32.97	31.16
KRH08479	Soybean	nucleus	46.01	30.98
TraesCS2D01G324700.1	Wheat	nucleus	39.49	30.88
TraesCS7D01G189900.1	Wheat	nucleus	35.87	30.65
KRH70130	Soybean	nucleus	45.29	30.49
TraesCS7D01G246100.1	Wheat	cytosol	36.96	30.45
TraesCS7D01G154200.1	Wheat	nucleus	39.13	30.34
TraesCS7D01G452500.1	Wheat	nucleus	33.7	30.19
TraesCS2D01G378800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	34.42	30.16
TraesCS7D01G543400.1	Wheat	nucleus	36.96	30.0
TraesCS7D01G451700.1	Wheat	nucleus	33.7	29.81
TraesCS6D01G362900.1	Wheat	nucleus	32.61	29.7
TraesCS5D01G283200.1	Wheat	mitochondrion, nucleus, plastid	39.13	29.67
VIT_08s0007g07640.t01	Wine grape	nucleus	42.39	29.03
TraesCS7D01G196300.1	Wheat	cytosol, nucleus, peroxisome	35.87	28.37
TraesCS6D01G362800.1	Wheat	nucleus	31.52	27.88
TraesCS7D01G342300.1	Wheat	nucleus	35.51	27.07
TraesCS5D01G148900.1	Wheat	nucleus	39.13	26.87
TraesCS7D01G543500.2	Wheat	endoplasmic reticulum	36.96	26.84
GSMUA_Achr8P21470_001	Banana	nucleus	45.29	24.22

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005
PANTHER:PTHR31744	PANTHER:PTHR31744:SF47	SUPFAM:SSF101941	EnsemblPlantsGene:TraesCS2D01G100800	EnsemblPlants:TraesCS2D01G100800.1	SEG:seg

Description

No Description!

Coordinates

chr2D:+:52959503..52960593

Molecular Weight (calculated)

30898.8 Da

IEP (calculated)

6.517

GRAVY (calculated)

-0.552

Length

276 amino acids

Sequence
(BLAST)

001: MSDVTAVMHL RGEEPWLALP PGFRFHPTDE EVVTHYLTPK IRNPDFSCLM VSYVNLNNTE PWDLPKKAKM GVGQSEWFFF VHKDRKYPTG TRTNRATKSG
101: YWKATGKDKE IFRGTGLGAV LVGMKKTLVF YRGRAPGGQK TPWVMHEYHL EGELPHRLPR SAKDDWAVCR LLNKDMAAKN APQMAPAADA GMEEEDPFAF
201: LDELLNSDDL LNNADLLDNA DPPMLMDSPS GAIDFAGASS STSSAALPIG PYMEHLTRKT EPPAPQQQSP NYMWKM

Best Arabidopsis Sequence Match ( AT3G04060.1 )
(BLAST)

001: MVEEGGVVVN QGGDQEVVDL PPGFRFHPTD EEIITHYLKE KVFNIRFTAA AIGQADLNKN EPWDLPKIAK MGEKEFYFFC QRDRKYPTGM RTNRATVSGY
101: WKATGKDKEI FRGKGCLVGM KKTLVFYTGR APKGEKTNWV MHEYRLDGKY SYHNLPKTAR DEWVVCRVFH KNAPSTTITT TKQLSRIDSL DNIDHLLDFS
201: SLPPLIDPGF LGQPGPSFSG ARQQHDLKPV LHHPTTAPVD NTYLPTQALN FPYHSVHNSG SDFGYGAGSG NNNKGMIKLE HSLVSVSQET GLSSDVNTTA
301: TPEISSYPMM MNPAMMDGSK SACDGLDDLI FWEDLYTS

Arabidopsis Description

anac046NAC domain-containing protein 46 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQQ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.