Factsheet for TraesCS4D01G176000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G195400.4
TraesCS1B01G210300.4
TraesCS1D01G199200.1
TraesCS4A01G321300.1
TraesCS5B01G557500.2
TraesCS5D01G551800.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04060.1	TraesCS1A01G195400.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1B01G210300.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1D01G199200.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS4A01G321300.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS5B01G557500.2	AT1G32230.1	19548978
AT3G04060.1	TraesCS5D01G551800.3	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G174000.1	Wheat	cytosol	97.37	97.65
TraesCS4A01G130600.1	Wheat	nucleus	97.37	97.37
HORVU4Hr1G051360.3	Barley	nucleus	92.4	91.33
Zm00001d047554_P001	Maize	cytoskeleton, cytosol, nucleus	76.61	75.29
Zm00001d028995_P001	Maize	cytosol	76.02	74.07
EER92328	Sorghum	cytosol	76.9	73.88
Os03t0327100-01	Rice	nucleus	75.44	72.07
CDY29982	Canola	cytosol	32.16	63.95
GSMUA_Achr5P07600_001	Banana	cytosol	39.77	55.28
GSMUA_Achr10P...	Banana	cytosol	36.26	54.39
TraesCS2D01G100800.1	Wheat	nucleus	43.27	53.62
TraesCS2D01G100900.1	Wheat	nucleus	53.51	51.84
GSMUA_Achr9P16920_001	Banana	cytosol	45.32	50.65
GSMUA_Achr6P08600_001	Banana	nucleus	50.0	49.28
TraesCS2D01G100600.1	Wheat	cytosol, nucleus, plastid	52.63	48.91
GSMUA_Achr6P32290_001	Banana	nucleus	49.12	48.55
GSMUA_Achr3P09520_001	Banana	cytosol	45.03	48.43
GSMUA_Achr7P18330_001	Banana	nucleus	42.98	47.73
CDY02636	Canola	nucleus	46.78	47.48
CDY53250	Canola	nucleus	46.49	47.32
TraesCS3D01G078500.1	Wheat	nucleus	30.99	47.11
Bra002148.1-P	Field mustard	nucleus	46.2	47.02
Bra023669.1-P	Field mustard	nucleus	46.2	47.02
CDX70804	Canola	nucleus	45.61	46.29
AT5G18270.1	Thale cress	nucleus	45.32	46.27
Bra006449.1-P	Field mustard	nucleus	45.32	46.13
CDY51238	Canola	nucleus	45.32	45.99
GSMUA_Achr3P18020_001	Banana	nucleus	38.89	45.39
AT3G04060.1	Thale cress	nucleus	43.86	44.38
Bra031950.1-P	Field mustard	cytoskeleton, cytosol, nucleus	43.57	43.31
Bra040153.1-P	Field mustard	nucleus	43.27	43.15
CDY50879	Canola	cytoskeleton, cytosol, nucleus	42.98	42.86
TraesCS2D01G100700.1	Wheat	cytosol, endoplasmic reticulum, nucleus	53.51	42.86
VIT_08s0007g07640.t01	Wine grape	nucleus	49.71	42.18
CDY42901	Canola	nucleus	42.4	42.15
KRG94783	Soybean	nucleus	48.54	40.99
KRH06738	Soybean	nucleus	48.25	40.54
TraesCS4D01G071200.1	Wheat	cytosol, mitochondrion, nucleus	34.5	39.46
TraesCS7D01G154200.1	Wheat	nucleus	40.06	38.48
KRH08479	Soybean	nucleus	45.91	38.29
TraesCS7D01G196300.1	Wheat	cytosol, nucleus, peroxisome	38.6	37.82
KRH70130	Soybean	nucleus	45.32	37.8
TraesCS7D01G189900.1	Wheat	nucleus	35.67	37.77
TraesCS2D01G324700.1	Wheat	nucleus	38.3	37.11
TraesCS7D01G543400.1	Wheat	nucleus	35.38	35.59
TraesCS5D01G059700.2	Wheat	cytosol, nucleus, peroxisome	30.41	34.32
TraesCS2D01G462900.1	Wheat	cytosol, nucleus, plastid	29.24	34.25
TraesCS7D01G302000.1	Wheat	cytosol	28.66	33.68
TraesCS7D01G452500.1	Wheat	nucleus	30.12	33.44
TraesCS7D01G543500.2	Wheat	endoplasmic reticulum	37.13	33.42
TraesCS5D01G283200.1	Wheat	mitochondrion, nucleus, plastid	35.38	33.24
TraesCS7D01G342300.1	Wheat	nucleus	35.09	33.15
TraesCS7D01G451700.1	Wheat	nucleus	29.53	32.37
TraesCS7D01G246100.1	Wheat	cytosol	31.58	32.24
TraesCS5D01G148900.1	Wheat	nucleus	37.72	32.09
TraesCS6D01G362900.1	Wheat	nucleus	26.61	30.03
TraesCS2D01G378800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	27.49	29.84
TraesCS6D01G362800.1	Wheat	nucleus	26.61	29.17
GSMUA_Achr8P21470_001	Banana	nucleus	42.69	28.29

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005
PANTHER:PTHR31744	PANTHER:PTHR31744:SF47	SUPFAM:SSF101941	EnsemblPlantsGene:TraesCS4D01G176000	EnsemblPlants:TraesCS4D01G176000.1	SEG:seg

Description

No Description!

Coordinates

chr4D:+:305140845..305142491

Molecular Weight (calculated)

37577.2 Da

IEP (calculated)

5.814

GRAVY (calculated)

-0.485

Length

342 amino acids

Sequence
(BLAST)

001: MSEASVLNQA EVEDAAAAAG LDLPPGFRFH PTDEEIISHY LTPKALDHRF CSGVIGEVDL NKCEPWHLPG KAKMGEKEWY FFCHKDRKYP TGTRTNRATE
101: SGYWKATGKD KEIFRGRGVL VGMKKTLVFY LGRAPRGEKT GWVMHEFRLE GKLPHPLPRS AKDEWAVSKV FNKELTATNG AMAAAEAGIE RVSSFGFIGD
201: FLDSGELPPL MDPPLGGDVD EVIDFKSTSA YATGAHSGLQ VKMEQHMPQQ PPHMMYSSPY FSLPAANSGD MSPAIRRYCK AEQVSGQTSA LSPSRETGLS
301: TDPNAAGCAE ISSAATPSSQ NQDFLDQFDE YPALNLADIW KY

Best Arabidopsis Sequence Match ( AT5G18270.2 )
(BLAST)

001: MAVVVEEGVV LNHGGEELVD LPPGFRFHPT DEEIITCYLK EKVLNSRFTA VAMGEADLNK CEPWDLPSKA KMGEKEFYFF CQRDRKYPTG MRTNRATESG
101: YWKATGKDKE IFKGKGCLVG MKKTLVFYRG RAPKGEKTNW VMHEYRLEGK YSYYNLPKSA RDEWVVCRVF HKNNPSTTTQ PMTRIPVEDF TRMDSLENID
201: HLLDFSSLPP LIDPSFMSQT EQPNFKPINP PTYDISSPIQ PHHFNSYQSI FNHQVFGSAS GSTYNNNNEM IKMEQSLVSV SQETCLSSDV NANMTTTTEV
301: SSGPVMKQEM GMMGMVNGSK SYEDLCDLRG DLWDF

Arabidopsis Description

ANAC087NAC domain-containing protein 87 [Source:UniProtKB/Swiss-Prot;Acc:Q9FK44]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.