Factsheet for TraesCS7D01G543400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G195400.4
TraesCS1B01G210300.4
TraesCS1D01G199200.1
TraesCS4A01G321300.1
TraesCS5B01G557500.2
TraesCS5D01G551800.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04060.1	TraesCS1A01G195400.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1B01G210300.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1D01G199200.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS4A01G321300.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS5B01G557500.2	AT1G32230.1	19548978
AT3G04060.1	TraesCS5D01G551800.3	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G569300.1	Wheat	cytosol	87.35	82.04
HORVU7Hr1G122680.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	77.94	71.62
TraesCS7D01G543500.2	Wheat	endoplasmic reticulum	78.24	70.0
TraesCS7D01G154200.1	Wheat	nucleus	65.0	62.08
TraesCS7D01G189900.1	Wheat	nucleus	58.53	61.61
TraesCS7D01G196300.1	Wheat	cytosol, nucleus, peroxisome	62.65	61.03
CDY29982	Canola	cytosol	27.65	54.65
EES02626	Sorghum	cytosol	22.35	53.15
TraesCS3D01G078500.1	Wheat	nucleus	34.41	52.0
GSMUA_Achr10P...	Banana	cytosol	32.35	48.25
GSMUA_Achr5P07600_001	Banana	cytosol	33.82	46.75
Os01t0104500-01	Rice	cytosol, mitochondrion, nucleus	40.0	42.5
Os01t0393100-01	Rice	nucleus	38.53	39.94
GSMUA_Achr9P16920_001	Banana	cytosol	35.88	39.87
TraesCS4D01G071200.1	Wheat	cytosol, mitochondrion, nucleus	34.71	39.46
GSMUA_Achr7P18330_001	Banana	nucleus	35.0	38.64
GSMUA_Achr3P09520_001	Banana	cytosol	35.29	37.74
GSMUA_Achr3P18020_001	Banana	nucleus	32.06	37.2
TraesCS2D01G100800.1	Wheat	nucleus	30.0	36.96
GSMUA_Achr6P08600_001	Banana	nucleus	36.47	35.73
TraesCS4D01G176000.1	Wheat	nucleus	35.59	35.38
GSMUA_Achr6P32290_001	Banana	nucleus	35.88	35.26
CDY02636	Canola	nucleus	33.53	33.83
CDX70804	Canola	nucleus	33.53	33.83
AT5G18270.1	Thale cress	nucleus	33.24	33.73
AT3G04060.1	Thale cress	nucleus	33.53	33.73
CDY53250	Canola	nucleus	33.24	33.63
Bra023669.1-P	Field mustard	nucleus	33.24	33.63
Bra006449.1-P	Field mustard	nucleus	33.24	33.63
CDY51238	Canola	nucleus	33.24	33.53
TraesCS5D01G283200.1	Wheat	mitochondrion, nucleus, plastid	35.59	33.24
OQU89451	Sorghum	cytosol	36.18	33.06
Bra002148.1-P	Field mustard	nucleus	32.65	33.04
CDY50879	Canola	cytoskeleton, cytosol, nucleus	33.24	32.94
Bra031950.1-P	Field mustard	cytoskeleton, cytosol, nucleus	33.24	32.85
CDY42901	Canola	nucleus	33.24	32.85
Zm00001d040189_P002	Maize	mitochondrion, nucleus, peroxisome	37.65	32.74
Bra040153.1-P	Field mustard	nucleus	32.65	32.36
KXG28945	Sorghum	cytoskeleton, nucleus, peroxisome	35.29	32.34
TraesCS2D01G100900.1	Wheat	nucleus	33.53	32.29
TraesCS7D01G246100.1	Wheat	cytosol	31.47	31.94
EES02651	Sorghum	nucleus	37.35	31.75
TraesCS7D01G302000.1	Wheat	cytosol	27.06	31.62
KRG94783	Soybean	nucleus	37.35	31.36
TraesCS5D01G059700.2	Wheat	cytosol, nucleus, peroxisome	27.94	31.35
VIT_08s0007g07640.t01	Wine grape	nucleus	37.06	31.27
TraesCS2D01G324700.1	Wheat	nucleus	32.35	31.16
TraesCS7D01G452500.1	Wheat	nucleus	27.94	30.84
TraesCS7D01G451700.1	Wheat	nucleus	28.24	30.77
TraesCS2D01G100600.1	Wheat	cytosol, nucleus, plastid	33.24	30.71
EES17917	Sorghum	cytosol	36.18	30.6
KRH08479	Soybean	nucleus	36.76	30.49
TraesCS2D01G462900.1	Wheat	cytosol, nucleus, plastid	26.18	30.48
KRH06738	Soybean	nucleus	36.47	30.47
Zm00001d008403_P001	Maize	plastid	28.53	30.12
KRH70130	Soybean	nucleus	35.88	29.76
TraesCS6D01G362900.1	Wheat	nucleus	26.47	29.7
TraesCS7D01G342300.1	Wheat	nucleus	31.18	29.28
TraesCS5D01G148900.1	Wheat	nucleus	34.41	29.1
TraesCS6D01G362800.1	Wheat	nucleus	25.59	27.88
TraesCS2D01G378800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	24.71	26.67
TraesCS2D01G100700.1	Wheat	cytosol, endoplasmic reticulum, nucleus	32.94	26.23
GSMUA_Achr8P21470_001	Banana	nucleus	38.53	25.39

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005
PANTHER:PTHR31744	PANTHER:PTHR31744:SF23	SUPFAM:SSF101941	EnsemblPlantsGene:TraesCS7D01G543400	EnsemblPlants:TraesCS7D01G543400.1	SEG:seg

Description

No Description!

Coordinates

chr7D:-:631919886..631921471

Molecular Weight (calculated)

38064.6 Da

IEP (calculated)

6.863

GRAVY (calculated)

-0.514

Length

340 amino acids

Sequence
(BLAST)

001: MTDHLQVQQQ KLELPLGFRF HPTDEEIINS YVIPKVLDEA FVTAAIEDVN LNKYEPWELP EKAKMGEKEW YFYSRKDRKY PTGIRTNRAT GVGYWKATGK
101: DKEIFHPPLT LIGMKKTLIF YKGRAPTGEK TNWIMHEYRL ESNKELTSNP STATRTVTAT KAASKEQWVV CRIFHKSTGL KKVVMPSYVM PMSTGAEHQQ
201: GLTDLDTFPP LMDYDMSSSL ANPTLLPAAS SYQLHDIGAG SSMIGSMALP MMNDHYIGNH RQQMISDPTP PLPFYQQHQQ MMMYMGEDQS FMVGAKPGCG
301: PSSMVSQEDA VTGLSNNYQG NAAATAGGKT SSVNMSMDDM

Best Arabidopsis Sequence Match ( AT2G24430.1 )
(BLAST)

001: MEQGDHQQHK KEEEALPPGF RFHPTDEELI SYYLVNKIAD QNFTGKAIAD VDLNKSEPWE LPEKAKMGGK EWYFFSLRDR KYPTGVRTNR ATNTGYWKTT
101: GKDKEIFNST TSELVGMKKT LVFYRGRAPR GEKTCWVMHE YRLHSKSSYR TSKQDEWVVC RVFKKTEATK KYISTSSSST SHHHNNHTRA SILSTNNNNP
201: NYSSDLLQLP PHLQPHPSLN INQSLMANAV HLAELSRVFR ASTSTTMDSS HQQLMNYTHM PVSGLNLNLG GALVQPPPVV SLEDVAAVSA SYNGENGFGN
301: VEMSQCMDLD GYWPSY

Arabidopsis Description

ANAC038NAC domain containing protein 38 [Source:UniProtKB/TrEMBL;Acc:Q9ZQ25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.