Factsheet for TraesCS2D01G100600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G195400.4
TraesCS1B01G210300.4
TraesCS1D01G199200.1
TraesCS4A01G321300.1
TraesCS5B01G557500.2
TraesCS5D01G551800.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04060.1	TraesCS1A01G195400.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1B01G210300.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1D01G199200.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS4A01G321300.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS5B01G557500.2	AT1G32230.1	19548978
AT3G04060.1	TraesCS5D01G551800.3	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G101000.1	Wheat	cytosol, nucleus, plastid	85.87	82.72
TraesCS2D01G100900.1	Wheat	nucleus	79.35	82.72
TraesCS2D01G100700.1	Wheat	cytosol, endoplasmic reticulum, nucleus	92.66	79.86
TraesCS2D01G100800.1	Wheat	nucleus	58.42	77.9
HORVU2Hr1G017350.1	Barley	nucleus	80.71	74.81
HORVU2Hr1G017370.1	Barley	cytosol, nucleus, plastid	80.71	69.88
HORVU2Hr1G017360.1	Barley	nucleus	27.99	67.76
EER97754	Sorghum	nucleus	55.43	61.26
Zm00001d022517_P001	Maize	nucleus	51.9	60.06
Os07t0684800-01	Rice	cytosol	48.64	59.47
CDY29982	Canola	cytosol	27.72	59.3
TraesCS4D01G176000.1	Wheat	nucleus	48.91	52.63
GSMUA_Achr10P...	Banana	cytosol	32.07	51.75
GSMUA_Achr5P07600_001	Banana	cytosol	33.7	50.41
GSMUA_Achr3P18020_001	Banana	nucleus	36.68	46.08
TraesCS3D01G078500.1	Wheat	nucleus	27.45	44.89
GSMUA_Achr9P16920_001	Banana	cytosol	34.78	41.83
GSMUA_Achr7P18330_001	Banana	nucleus	33.97	40.58
CDY53250	Canola	nucleus	36.96	40.48
GSMUA_Achr6P32290_001	Banana	nucleus	38.04	40.46
CDY02636	Canola	nucleus	36.96	40.36
Bra023669.1-P	Field mustard	nucleus	36.68	40.18
GSMUA_Achr6P08600_001	Banana	nucleus	37.77	40.06
Bra006449.1-P	Field mustard	nucleus	36.41	39.88
Bra002148.1-P	Field mustard	nucleus	36.41	39.88
CDY51238	Canola	nucleus	36.41	39.76
CDX70804	Canola	nucleus	36.41	39.76
AT5G18270.1	Thale cress	nucleus	36.14	39.7
GSMUA_Achr3P09520_001	Banana	cytosol	34.24	39.62
AT3G04060.1	Thale cress	nucleus	36.14	39.35
TraesCS4D01G071200.1	Wheat	cytosol, mitochondrion, nucleus	31.79	39.13
Bra040153.1-P	Field mustard	nucleus	35.33	37.9
KRG94783	Soybean	nucleus	41.3	37.53
KRH06738	Soybean	nucleus	41.3	37.35
CDY50879	Canola	cytoskeleton, cytosol, nucleus	34.78	37.32
CDY42901	Canola	nucleus	34.78	37.21
Bra031950.1-P	Field mustard	cytoskeleton, cytosol, nucleus	34.51	36.92
TraesCS7D01G302000.1	Wheat	cytosol	27.45	34.71
TraesCS5D01G059700.2	Wheat	cytosol, nucleus, peroxisome	28.53	34.65
KRH08479	Soybean	nucleus	38.59	34.63
KRH70130	Soybean	nucleus	38.59	34.63
TraesCS7D01G452500.1	Wheat	nucleus	28.8	34.42
VIT_08s0007g07640.t01	Wine grape	nucleus	37.5	34.24
TraesCS2D01G324700.1	Wheat	nucleus	32.34	33.71
TraesCS7D01G451700.1	Wheat	nucleus	28.53	33.65
TraesCS7D01G196300.1	Wheat	cytosol, nucleus, peroxisome	31.52	33.24
TraesCS7D01G543400.1	Wheat	nucleus	30.71	33.24
TraesCS7D01G189900.1	Wheat	nucleus	28.8	32.82
TraesCS2D01G462900.1	Wheat	cytosol, nucleus, plastid	25.82	32.53
TraesCS7D01G154200.1	Wheat	nucleus	31.25	32.3
TraesCS5D01G283200.1	Wheat	mitochondrion, nucleus, plastid	30.98	31.32
TraesCS7D01G246100.1	Wheat	cytosol	27.99	30.75
TraesCS7D01G342300.1	Wheat	nucleus	30.16	30.66
TraesCS7D01G543500.2	Wheat	endoplasmic reticulum	31.52	30.53
TraesCS2D01G378800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	25.82	30.16
TraesCS6D01G362900.1	Wheat	nucleus	24.46	29.7
TraesCS5D01G148900.1	Wheat	nucleus	32.34	29.6
TraesCS6D01G362800.1	Wheat	nucleus	24.18	28.53
GSMUA_Achr8P21470_001	Banana	nucleus	38.04	27.13

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005
PANTHER:PTHR31744	PANTHER:PTHR31744:SF47	SUPFAM:SSF101941	EnsemblPlantsGene:TraesCS2D01G100600	EnsemblPlants:TraesCS2D01G100600.1	SEG:seg

Description

No Description!

Coordinates

chr2D:+:52646868..52648658

Molecular Weight (calculated)

40420.1 Da

IEP (calculated)

5.290

GRAVY (calculated)

-0.401

Length

368 amino acids

Sequence
(BLAST)

001: MSDVTAVMAL EMEEPKLVLP PGFRFHPTDE EVVTHYLTRK VLRESFSCQV IADVDLNKTE PWDLPGKAKM GEKEWFFFVH KGRKYPTGTR TNRATEKGYW
101: KATGKDKEIF RGKGRDAVLV GMKKTLVFYT GRAPSGGKTP WVMHEYRLEG ELPHRLPRTA KDDWAVCRVI NKDLAARNAL QMAPAAGGGM EDPLAFLDDV
201: LNNDDLLNNA ELLDNAGLLD NADLPMLMDS PSGADDFAGA SSSSSSAALP LEPDTVHLTI KTESPPPQQQ MQSPYYFMPA AANGNLGGAG YSPYQAMGDQ
301: QAAIRRYSKP KAQVASSSAL LNPSLGLDTV AVAGADTSFL MASSRSYLDL EELFRGEPLM DYSNMWKI

Best Arabidopsis Sequence Match ( AT3G04060.1 )
(BLAST)

001: MVEEGGVVVN QGGDQEVVDL PPGFRFHPTD EEIITHYLKE KVFNIRFTAA AIGQADLNKN EPWDLPKIAK MGEKEFYFFC QRDRKYPTGM RTNRATVSGY
101: WKATGKDKEI FRGKGCLVGM KKTLVFYTGR APKGEKTNWV MHEYRLDGKY SYHNLPKTAR DEWVVCRVFH KNAPSTTITT TKQLSRIDSL DNIDHLLDFS
201: SLPPLIDPGF LGQPGPSFSG ARQQHDLKPV LHHPTTAPVD NTYLPTQALN FPYHSVHNSG SDFGYGAGSG NNNKGMIKLE HSLVSVSQET GLSSDVNTTA
301: TPEISSYPMM MNPAMMDGSK SACDGLDDLI FWEDLYTS

Arabidopsis Description

anac046NAC domain-containing protein 46 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQQ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.