Factsheet for TraesCS2D01G100900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G195400.4
TraesCS1B01G210300.4
TraesCS1D01G199200.1
TraesCS4A01G321300.1
TraesCS5B01G557500.2
TraesCS5D01G551800.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04060.1	TraesCS1A01G195400.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1B01G210300.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1D01G199200.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS4A01G321300.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS5B01G557500.2	AT1G32230.1	19548978
AT3G04060.1	TraesCS5D01G551800.3	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G118500.1	Wheat	cytosol	97.45	97.73
TraesCS2A01G101400.1	Wheat	cytosol	92.63	92.63
HORVU2Hr1G017400.3	Barley	nucleus	87.82	80.94
TraesCS2D01G100600.1	Wheat	cytosol, nucleus, plastid	82.72	79.35
TraesCS2D01G100800.1	Wheat	nucleus	59.49	76.09
TraesCS2D01G100700.1	Wheat	cytosol, endoplasmic reticulum, nucleus	82.44	68.15
EER97754	Sorghum	nucleus	58.07	61.56
Os07t0684800-01	Rice	cytosol	52.12	61.13
CDY29982	Canola	cytosol	29.18	59.88
Zm00001d022517_P001	Maize	nucleus	53.54	59.43
TraesCS4D01G176000.1	Wheat	nucleus	51.84	53.51
GSMUA_Achr10P...	Banana	cytosol	34.28	53.07
GSMUA_Achr5P07600_001	Banana	cytosol	36.26	52.03
GSMUA_Achr3P18020_001	Banana	nucleus	39.09	47.1
TraesCS3D01G078500.1	Wheat	nucleus	29.46	46.22
GSMUA_Achr9P16920_001	Banana	cytosol	38.81	44.77
GSMUA_Achr3P09520_001	Banana	cytosol	38.53	42.77
GSMUA_Achr7P18330_001	Banana	nucleus	36.54	41.88
GSMUA_Achr6P32290_001	Banana	nucleus	40.23	41.04
CDY53250	Canola	nucleus	38.81	40.77
CDY02636	Canola	nucleus	38.81	40.65
Bra023669.1-P	Field mustard	nucleus	38.53	40.48
GSMUA_Achr6P08600_001	Banana	nucleus	39.66	40.35
AT5G18270.1	Thale cress	nucleus	37.96	40.0
AT3G04060.1	Thale cress	nucleus	38.24	39.94
Bra002148.1-P	Field mustard	nucleus	37.96	39.88
Bra006449.1-P	Field mustard	nucleus	37.68	39.58
CDX70804	Canola	nucleus	37.68	39.47
CDY51238	Canola	nucleus	37.68	39.47
TraesCS4D01G071200.1	Wheat	cytosol, mitochondrion, nucleus	33.14	39.13
CDY42901	Canola	nucleus	37.11	38.08
CDY50879	Canola	cytoskeleton, cytosol, nucleus	36.83	37.9
Bra040153.1-P	Field mustard	nucleus	36.83	37.9
Bra031950.1-P	Field mustard	cytoskeleton, cytosol, nucleus	36.54	37.5
KRH06738	Soybean	nucleus	43.06	37.35
KRG94783	Soybean	nucleus	42.78	37.28
TraesCS2D01G324700.1	Wheat	nucleus	36.26	36.26
VIT_08s0007g07640.t01	Wine grape	nucleus	41.08	35.98
KRH70130	Soybean	nucleus	41.08	35.37
KRH08479	Soybean	nucleus	40.79	35.12
TraesCS5D01G059700.2	Wheat	cytosol, nucleus, peroxisome	29.75	34.65
TraesCS7D01G154200.1	Wheat	nucleus	34.84	34.55
TraesCS7D01G302000.1	Wheat	cytosol	28.33	34.36
TraesCS7D01G452500.1	Wheat	nucleus	29.75	34.09
TraesCS2D01G462900.1	Wheat	cytosol, nucleus, plastid	28.05	33.9
TraesCS7D01G451700.1	Wheat	nucleus	29.75	33.65
TraesCS7D01G543400.1	Wheat	nucleus	32.29	33.53
TraesCS7D01G196300.1	Wheat	cytosol, nucleus, peroxisome	33.14	33.52
TraesCS7D01G189900.1	Wheat	nucleus	30.31	33.13
TraesCS5D01G283200.1	Wheat	mitochondrion, nucleus, plastid	33.71	32.69
TraesCS2D01G378800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	28.33	31.75
TraesCS7D01G246100.1	Wheat	cytosol	30.03	31.64
TraesCS7D01G543500.2	Wheat	endoplasmic reticulum	33.43	31.05
TraesCS6D01G362900.1	Wheat	nucleus	26.35	30.69
TraesCS7D01G342300.1	Wheat	nucleus	31.44	30.66
TraesCS6D01G362800.1	Wheat	nucleus	26.35	29.81
TraesCS5D01G148900.1	Wheat	nucleus	33.14	29.1
GSMUA_Achr8P21470_001	Banana	nucleus	40.79	27.91

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005
PANTHER:PTHR31744	PANTHER:PTHR31744:SF47	SUPFAM:SSF101941	EnsemblPlantsGene:TraesCS2D01G100900	EnsemblPlants:TraesCS2D01G100900.1	SEG:seg

Description

No Description!

Coordinates

chr2D:+:53649014..53650370

Molecular Weight (calculated)

39048.0 Da

IEP (calculated)

5.257

GRAVY (calculated)

-0.524

Length

353 amino acids

Sequence
(BLAST)

001: MSDVTAVMDL EEEEPRLSLP PGFRFHPTDE EVVTHYLTPK AVNNAFSCLV IADVDLNKTE PWDLPGKAKM GEKEWYFFVH KDRKYPTGMR TNRATEKGYW
101: KATGKDKEIF RGKGRDAVLV GMKKTLVFYT GRAPRGDKTP YVMHEYRLEG QLPHRLPRSA KNDWAVCRVF DKDLAAKNAP PQTAPAAVGV MEDPYAFLDV
201: DDFLNNPDLL NNADLPMLMD SPSGADDFAG ASSSTSSAAV PFEPDMEHLS IKTEPPVPQQ QMQSPNYFYM PAATPNGNHG GAGYSPYQAM GDQQTAIRRH
301: CKPEAASSSA LLSPSLGFDA GALAGADTSS FLMPSSRSYL DLEVMDYSNM WKI

Best Arabidopsis Sequence Match ( AT5G07680.1 )
(BLAST)

001: METFGVFHKE DDEQMDLPPG FRFHPTDEEL ITHYLHKKVL DLGFSAKAIG EVDLNKAEPW ELPYKAKIGE KEWYFFCVRD RKYPTGLRTN RATQAGYWKA
101: TGKDKEIFRG KSLVGMKKTL VFYRGRAPKG QKTNWVMHEY RLDGKLSAHN LPKTAKNEWV ICRVFHKTAG GKKIPISTLI RIGSYGTGSS LPPLTDSSPY
201: NDKTKTEPVY VPCFSNQAET RGTILNCFSN PSLSSIQPDF LQMIPLYQPQ SLNISESSNP VLTQEQSVLQ AMMENNRRQN FKTLSISQET GVSNTDNSSV
301: FEFGRKRFDH QEVPSPSSGP VDLEPFWNY

Arabidopsis Description

NAC079NAC4 [Source:UniProtKB/TrEMBL;Acc:A0A178UL34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.